| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os01g45060.1 |
| Family | GH28 |
| Protein Properties | Length: 424 Molecular Weight: 46261.3 Isoelectric Point: 6.8108 |
| Chromosome | Chromosome/Scaffold: 1 Start: 25579802 End: 25583765 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 85 | 375 | 0 |
| SLDGTIVAPTSAKAWDSGLLQWIEFTKLNGVSIQGNGIINGRGQQWWTYSDTDDDENDDTQYDVEFERMPQVKPTALRFYGSFNVVVAGITIVNSSQCHL KFDSCQGVMVHDVTISSPENSLNTDGIHLQNSKDVSIHHTNLACGDDCVSIQTGCSNINIHNVNCGPGHGISIGGLGRDNTKACVSNVTVRDVNMFRTMT GVRIKTWQGGLGLVQDVRFSNIQVSEVQTPIIIDQFYCDERTCSNQTSAVAVSGVQYENIRGTFTIKPVHFACSDSSPCSGITLTGVQLRP | |||
| Full Sequence |
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| Protein Sequence Length: 424 Download |
| MASISRMETP QLRVLRLLNR ADVATTLVKW LGRIRTLYMA IRPEARRPGP QHSILADPTT 60 GPCLGLPTGM LGRPGMTDPA RHDGSLDGTI VAPTSAKAWD SGLLQWIEFT KLNGVSIQGN 120 GIINGRGQQW WTYSDTDDDE NDDTQYDVEF ERMPQVKPTA LRFYGSFNVV VAGITIVNSS 180 QCHLKFDSCQ GVMVHDVTIS SPENSLNTDG IHLQNSKDVS IHHTNLACGD DCVSIQTGCS 240 NINIHNVNCG PGHGISIGGL GRDNTKACVS NVTVRDVNMF RTMTGVRIKT WQGGLGLVQD 300 VRFSNIQVSE VQTPIIIDQF YCDERTCSNQ TSAVAVSGVQ YENIRGTFTI KPVHFACSDS 360 SPCSGITLTG VQLRPVQISH YRLNNPFCWQ AFGELYTPTV PPIACLHLGK PAGNNLQSYH 420 DLC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 2.0e-45 | 63 | 423 | 378 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 3.0e-48 | 68 | 374 | 311 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 6.0e-53 | 158 | 374 | 218 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 7.0e-61 | 86 | 406 | 325 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-64 | 71 | 373 | 306 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN35722.1 | 0 | 86 | 423 | 205 | 541 | unknown [Zea mays] |
| DDBJ | BAD68575.1 | 0 | 1 | 423 | 1 | 423 | polygalacturonase PG1-like [Oryza sativa Japonica Group] |
| GenBank | EAY75104.1 | 0 | 1 | 423 | 1 | 374 | hypothetical protein OsI_03000 [Oryza sativa Indica Group] |
| RefSeq | NP_001043666.1 | 0 | 86 | 423 | 201 | 538 | Os01g0636500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148771.1 | 0 | 86 | 423 | 205 | 541 | polygalacturonase [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 7e-26 | 117 | 329 | 113 | 321 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 9e-19 | 115 | 386 | 72 | 331 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 9e-19 | 115 | 386 | 72 | 331 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 9e-19 | 115 | 386 | 72 | 331 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 9e-19 | 115 | 386 | 72 | 331 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EB402734 | 257 | 167 | 423 | 0 |
| JG927574 | 256 | 148 | 403 | 0 |
| GO844325 | 248 | 177 | 424 | 0 |
| GO793346 | 245 | 179 | 423 | 0 |
| GO844325 | 28 | 149 | 176 | 0.3 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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