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Basic Information | |
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Species | Oryza sativa |
Cazyme ID | LOC_Os01g45350.1 |
Family | GT47 |
Protein Properties | Length: 384 Molecular Weight: 44217.4 Isoelectric Point: 9.9276 |
Chromosome | Chromosome/Scaffold: 1 Start: 25745252 End: 25747963 |
Description | Exostosin family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 46 | 333 | 0 |
RILKVYIYQDGRRPIFHTPPLSGIYASEGWFMKLLKESRRFAVTDPAKAHLFYLPYSSQQLRISLYVPDSHNLRPLAAYLRDFVKGLAAKYPFWNRTRGA DHFLVACHDWGSYTTTAHGDLRRNTVKALCNADSSEGIFTPGRDVSLPETTIRTPRRPLRYVGGLPVSRRGILAFFAGNVHGRVRPVLLKHWGDGRDDDM RVYGPLPARVSRRMSYIQHMKNSRFCLCPMGYEVNSPRIVEALYYECVPVIIADNFVLPLSDVLDWSAFAVVVAEKDVPDLKKILQGI |
Full Sequence |
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Protein Sequence Length: 384 Download |
MAPEEALRYA KKEIMAAGPV IDDPDLYAPL FKNVSQFKRS YELMERILKV YIYQDGRRPI 60 FHTPPLSGIY ASEGWFMKLL KESRRFAVTD PAKAHLFYLP YSSQQLRISL YVPDSHNLRP 120 LAAYLRDFVK GLAAKYPFWN RTRGADHFLV ACHDWGSYTT TAHGDLRRNT VKALCNADSS 180 EGIFTPGRDV SLPETTIRTP RRPLRYVGGL PVSRRGILAF FAGNVHGRVR PVLLKHWGDG 240 RDDDMRVYGP LPARVSRRMS YIQHMKNSRF CLCPMGYEVN SPRIVEALYY ECVPVIIADN 300 FVLPLSDVLD WSAFAVVVAE KDVPDLKKIL QGITLRKYVA MHGCVKRLQR HFLWHARPLR 360 YDLFHMILHS IWLSRVNQIE LHE* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 4.0e-71 | 48 | 333 | 302 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0003674 | molecular_function |
GO:0008150 | biological_process |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC71161.1 | 0 | 1 | 383 | 117 | 499 | hypothetical protein OsI_03019 [Oryza sativa Indica Group] |
GenBank | EEE55063.1 | 0 | 1 | 383 | 117 | 482 | hypothetical protein OsJ_02778 [Oryza sativa Japonica Group] |
RefSeq | NP_001043679.1 | 0 | 1 | 383 | 117 | 501 | Os01g0640600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002269459.1 | 0 | 1 | 381 | 156 | 535 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002456034.1 | 0 | 1 | 381 | 135 | 515 | hypothetical protein SORBIDRAFT_03g029210 [Sorghum bicolor] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
BX834842 | 335 | 45 | 378 | 0 |
GT051299 | 334 | 35 | 368 | 0 |
CF439188 | 277 | 49 | 324 | 0 |
CV529785 | 252 | 86 | 337 | 0 |
DT597828 | 264 | 2 | 265 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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