| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os01g46430.1 |
| Family | GT4 |
| Protein Properties | Length: 504 Molecular Weight: 55851.1 Isoelectric Point: 8.4757 |
| Chromosome | Chromosome/Scaffold: 1 Start: 26420263 End: 26421981 |
| Description | UDP-Glycosyltransferase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT4 | 319 | 460 | 2e-26 |
| VFGVSGRLVKDKGHPLLYEAFSKLVLRHPNVYLLVAGKGPWEQRYMDLGRNAKVLGAVPPEKLKAFYNALDVFVDPTLRPQGLDLTLMEAMQCGKPVLAT RFPSIKGSIVVDDEFGYMFAPNVESLLEKLEAVVEEGARRAA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 504 Download |
| MALISSLQRP RKPRCPSHPM LSLSPSLVCL LVLLPFLSLL LLHRSAFPAS RSPLLAHLTA 60 SSSSRSSASG FAGGDLREIE FSWNHLPFRQ SRPPPARLKI AVFSRKWPVA SAPGGMERHA 120 HTLHTALAAR GHRVHVFTSP PPHTEAAPPR SADGPQLHFL DGDPGVWRCD EAWKLYEAEA 180 ENDPFDVIHS ESVAVFHRWA RGVPNLVVSW HGISLEALHS GIYQDLARGD DERMSPAFNH 240 SLAQSVYRVL SEVRFFRSYA HHVAISDATG EMLRDVYQIP SRRVHVILNG VDEAQFEPDA 300 ALGRAFREDL GLPKGADLVF GVSGRLVKDK GHPLLYEAFS KLVLRHPNVY LLVAGKGPWE 360 QRYMDLGRNA KVLGAVPPEK LKAFYNALDV FVDPTLRPQG LDLTLMEAMQ CGKPVLATRF 420 PSIKGSIVVD DEFGYMFAPN VESLLEKLEA VVEEGARRAA QRGRACRDYA KTMFAATKMA 480 LAYERLFLCV KNDTFCAYPA EFD* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd03807 | GT1_WbnK_like | 6.0e-30 | 254 | 487 | 243 | + This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis. | ||
| TIGR00032 | argG | 1.0e-32 | 130 | 448 | 339 | + argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria [Amino acid biosynthesis, Glutamate family]. | ||
| cd03811 | GT1_WabH_like | 3.0e-35 | 114 | 448 | 346 | + This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core. | ||
| cd03798 | GT1_wlbH_like | 1.0e-41 | 114 | 448 | 358 | + This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. | ||
| cd03801 | GT1_YqgM_like | 9.0e-54 | 99 | 448 | 363 | + This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005575 | cellular_component |
| GO:0008152 | metabolic process |
| GO:0009058 | biosynthetic process |
| GO:0016740 | transferase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAZ12928.1 | 0 | 20 | 503 | 1 | 485 | hypothetical protein OsJ_02849 [Oryza sativa Japonica Group] |
| RefSeq | NP_001043742.1 | 0 | 1 | 503 | 1 | 503 | Os01g0653200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002303479.1 | 0 | 9 | 498 | 6 | 488 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002326600.1 | 0 | 8 | 498 | 5 | 487 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002456068.1 | 0 | 1 | 503 | 1 | 500 | hypothetical protein SORBIDRAFT_03g029770 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2gek_A | 0.00000001 | 113 | 466 | 34 | 361 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 2gej_A | 0.00000001 | 113 | 466 | 34 | 361 | A Chain A, Crystal Structure Of Phosphatidylinositol Mannosyltransferase (Pima) From Mycobacterium Smegmatis In Complex With Gdp-Man |
| PDB | 3oka_B | 0.00000005 | 289 | 417 | 170 | 308 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
| PDB | 3oka_A | 0.00000005 | 289 | 417 | 170 | 308 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
| PDB | 3okp_A | 0.00000005 | 289 | 417 | 170 | 308 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
