| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os01g53990.1 |
| Family | CE8 |
| Protein Properties | Length: 385 Molecular Weight: 41890.4 Isoelectric Point: 8.3388 |
| Chromosome | Chromosome/Scaffold: 1 Start: 31055593 End: 31058475 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 86 | 378 | 0 |
| VVDKNPAFGDFTTIQAAVDSLPIINLVRVVIKVNAGTYTEKVNISPMRAFITLEGAGADKTIVQWGDTADSPSGRAGRPLGTYSSASFAVNAQYFLARNI TFKNTSPVPKPGASGKQAVALRVSADNAAFVGCRFLGAQDTLYDHSGRHYYKECYIEGSVDFIFGNALSLFEDCHVHAIARDYGALTAQNRQSMLEDTGF SFVNCRVTGSGALYLGRAWGTFSRVVFAYTYMDDIIIPRGWYNWGDPNRELTVFYGQYKCTGPGASFSGRVSWSRELTDEEAKPFISLTFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 385 Download |
| MAVAPVRLVA CIVALAAVAP GGVAGHTRGV RPGRAAGKQQ PSFPENATRV EAIERQFMEW 60 VRYMGGLEHS TVHHALARAF PSYSLVVDKN PAFGDFTTIQ AAVDSLPIIN LVRVVIKVNA 120 GTYTEKVNIS PMRAFITLEG AGADKTIVQW GDTADSPSGR AGRPLGTYSS ASFAVNAQYF 180 LARNITFKNT SPVPKPGASG KQAVALRVSA DNAAFVGCRF LGAQDTLYDH SGRHYYKECY 240 IEGSVDFIFG NALSLFEDCH VHAIARDYGA LTAQNRQSML EDTGFSFVNC RVTGSGALYL 300 GRAWGTFSRV VFAYTYMDDI IIPRGWYNWG DPNRELTVFY GQYKCTGPGA SFSGRVSWSR 360 ELTDEEAKPF ISLTFIDGTE WVRL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02432 | PLN02432 | 8.0e-115 | 94 | 383 | 290 | + putative pectinesterase | ||
| PLN02304 | PLN02304 | 2.0e-115 | 85 | 383 | 307 | + probable pectinesterase | ||
| PLN02634 | PLN02634 | 1.0e-117 | 85 | 382 | 299 | + probable pectinesterase | ||
| PLN02665 | PLN02665 | 4.0e-119 | 93 | 381 | 291 | + pectinesterase family protein | ||
| PLN02682 | PLN02682 | 0 | 35 | 384 | 350 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0005737 | cytoplasm |
| GO:0008150 | biological_process |
| GO:0008152 | metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN26093.1 | 0 | 9 | 384 | 14 | 399 | unknown [Zea mays] |
| GenBank | ACR36293.1 | 0 | 9 | 384 | 14 | 391 | unknown [Zea mays] |
| DDBJ | BAD87905.1 | 0 | 1 | 336 | 1 | 336 | pectinesterase-like [Oryza sativa Japonica Group] |
| RefSeq | NP_001044216.1 | 0 | 1 | 384 | 1 | 384 | Os01g0743200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002458469.1 | 0 | 1 | 384 | 1 | 402 | hypothetical protein SORBIDRAFT_03g034250 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 94 | 383 | 17 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 1.4013e-45 | 94 | 383 | 13 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 2e-28 | 83 | 377 | 31 | 360 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 3e-17 | 82 | 370 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 3e-17 | 82 | 370 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
