| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os01g62000.1 |
| Family | PL1 |
| Protein Properties | Length: 344 Molecular Weight: 37683.2 Isoelectric Point: 4.8782 |
| Chromosome | Chromosome/Scaffold: 1 Start: 35889803 End: 35891365 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 56 | 235 | 0 |
| IVFDVSGTIHLSTGLRVSSYKTIDGRGQRVTLSGKGLQLRECEHVIVCNLEVEGCRGHDADAVAVKPGSRHVWIDRCGLRGCGDGLLDVTRGSTDVTVSR CRFSAHDKAVLIGGSAGHVEDRAIRVTIHHCLFDGTRQRHPRVRFGRVHLYNNYTRGWGIYAVCASVESQIVSQCNIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 344 Download |
| MEPPQLDGQC GGEPPASVEG VVFMPYATAD SSLRVMADDG DGSLREGCRR REPLWIVFDV 60 SGTIHLSTGL RVSSYKTIDG RGQRVTLSGK GLQLRECEHV IVCNLEVEGC RGHDADAVAV 120 KPGSRHVWID RCGLRGCGDG LLDVTRGSTD VTVSRCRFSA HDKAVLIGGS AGHVEDRAIR 180 VTIHHCLFDG TRQRHPRVRF GRVHLYNNYT RGWGIYAVCA SVESQIVSQC NIYEAGEKKK 240 VFKYMIEQAA DRDQSSTGFI RSEGDLFLNG AEECTAQDSE AAADELWDFK IQELDFYQSC 300 SVQPASMALK ELLECFTGWQ PVPLPEDTCL EEETDSAPAD TTA* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 3.0e-29 | 57 | 231 | 195 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 9.0e-34 | 53 | 273 | 240 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 5.0e-58 | 59 | 236 | 190 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD73403.1 | 0 | 1 | 343 | 1 | 343 | putative pectate lyase [Oryza sativa Japonica Group] |
| GenBank | EAY76417.1 | 0 | 36 | 343 | 1 | 308 | hypothetical protein OsI_04348 [Oryza sativa Indica Group] |
| GenBank | EAZ14076.1 | 0 | 1 | 343 | 1 | 310 | hypothetical protein OsJ_04000 [Oryza sativa Japonica Group] |
| RefSeq | NP_001043284.1 | 0 | 15 | 325 | 32 | 361 | Os01g0546800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002456600.1 | 0 | 1 | 343 | 1 | 364 | hypothetical protein SORBIDRAFT_03g039150 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 1e-36 | 42 | 280 | 56 | 316 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 1e-36 | 42 | 280 | 56 | 316 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 9e-23 | 70 | 233 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 4e-21 | 57 | 233 | 49 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 1e-17 | 77 | 269 | 82 | 286 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DW066041 | 290 | 36 | 325 | 0 |
| JG177860 | 294 | 32 | 325 | 0 |
| EB434087 | 258 | 32 | 280 | 0 |
| DY275282 | 335 | 21 | 330 | 0 |
| FC884660 | 314 | 21 | 299 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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