Basic Information | |
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Species | Oryza sativa |
Cazyme ID | LOC_Os01g71690.2 |
Family | GH17 |
Protein Properties | Length: 811 Molecular Weight: 87758.2 Isoelectric Point: 7.6253 |
Chromosome | Chromosome/Scaffold: 1 Start: 41539700 End: 41545870 |
Description | RECA homolog 3 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH17 | 471 | 772 | 0 |
IGVCYGMNGDGLPSRSNVVQLYKSNGIGAMRIYSADREALDALRGSGIDLALDVGERNDVGQLAANADSWVQDNVKAYYPDVKIKYIVVGNELTGTGDAA SILPAMQNVQAALASAGLADSIKVTTAIKMDTLAASSPPSAGVFTNPSVMEPIVRFLTGNGAPLLANVYPYFAYRDSQDIDLSYALFQPSSTTVSDPNGG GLSYTNLFDAMVDAVRAAVEKVSGGGSSVVDVVVSESGWPSDGGKGATVENARAYNQNLIDHVAQGTPKKPGQMEVYVFALFNENRKEGDATEKKFGLFN PR |
Full Sequence |
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Protein Sequence Length: 811 Download |
MRALVASSAL LRRSAARANL SGAGFCNGAP PVSSPLRRFP LQNWINDRFC WFLSKSCSMS 60 TSDYETDPPL DGVKVLEKES TLSVAVSQLA SDFDRESNLC LERFSRTRRT PVISTGSLKL 120 DIALGIGGLP KGRMVELFGK EASGKTTLAL HVVKEAQKKG GCCAYIDAEN AFNPSVAEAI 180 GVNVEKLLIA QPDSAENSLS IVNTLVGGSI DVVVVDSVAA LIPRCELEGE IYMNSEDVQS 240 RLMTRALRKI QHTLSRSETL IIFVNQVRTK LSSNQTPGIF KEVACGGNAL GFYAAVRMRT 300 SRRELRYNEA QATGIGISVQ IIKNKLAPAT LKEAGIDIRF GKGICYESEI LELASSLGVI 360 MKDDSGYWIN GEFLPNKAEA EKFLRENAAV ADEICGTMRR QFFESLRLEI PSSVTIKASL 420 QRCIFLHPDR VQVQQIKLVA AEDVYARRCS CACSGFGHCS LRLLSFSMRS IGVCYGMNGD 480 GLPSRSNVVQ LYKSNGIGAM RIYSADREAL DALRGSGIDL ALDVGERNDV GQLAANADSW 540 VQDNVKAYYP DVKIKYIVVG NELTGTGDAA SILPAMQNVQ AALASAGLAD SIKVTTAIKM 600 DTLAASSPPS AGVFTNPSVM EPIVRFLTGN GAPLLANVYP YFAYRDSQDI DLSYALFQPS 660 STTVSDPNGG GLSYTNLFDA MVDAVRAAVE KVSGGGSSVV DVVVSESGWP SDGGKGATVE 720 NARAYNQNLI DHVAQGTPKK PGQMEVYVFA LFNENRKEGD ATEKKFGLFN PRQDTGLPNH 780 FLKNYSNTEY VLRRTVYIMC LIWCLRIKIC * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR02012 | tigrfam_recA | 1.0e-85 | 77 | 394 | 323 | + protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage [DNA metabolism, DNA replication, recombination, and repair]. | ||
pfam00154 | RecA | 4.0e-88 | 82 | 402 | 326 | + recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyzes an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination. | ||
PRK09354 | recA | 9.0e-97 | 77 | 394 | 323 | + recombinase A; Provisional | ||
cd00983 | recA | 8.0e-109 | 77 | 403 | 329 | + RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. | ||
pfam00332 | Glyco_hydro_17 | 8.0e-129 | 471 | 771 | 308 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0000166 | nucleotide binding |
GO:0003677 | DNA binding |
GO:0003697 | single-stranded DNA binding |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005524 | ATP binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB63855.1 | 0 | 468 | 810 | 1 | 343 | putative beta 1,3-glucanase [Oryza sativa Japonica Group] |
GenBank | EEC72138.1 | 0 | 1 | 404 | 1 | 409 | hypothetical protein OsI_05156 [Oryza sativa Indica Group] |
GenBank | EEE55988.1 | 0 | 63 | 404 | 50 | 391 | hypothetical protein OsJ_04733 [Oryza sativa Japonica Group] |
RefSeq | NP_001045374.1 | 0 | 493 | 810 | 1 | 318 | Os01g0944900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002459081.1 | 0 | 34 | 781 | 33 | 759 | hypothetical protein SORBIDRAFT_03g045520 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghs_B | 0 | 471 | 771 | 1 | 296 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 471 | 771 | 1 | 296 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 2cyg_A | 0 | 471 | 774 | 1 | 305 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 471 | 773 | 2 | 307 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 0 | 471 | 773 | 2 | 307 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO884376 | 327 | 106 | 428 | 0 |
JK731426 | 328 | 78 | 404 | 0 |
CF322550 | 186 | 24 | 204 | 0 |
CK211028 | 245 | 161 | 405 | 0 |
HX197528 | 241 | 30 | 265 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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