| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os01g71690.3 |
| Family | GH17 |
| Protein Properties | Length: 678 Molecular Weight: 73311.7 Isoelectric Point: 6.29 |
| Chromosome | Chromosome/Scaffold: 1 Start: 41539690 End: 41545870 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH17 | 338 | 639 | 0 |
| IGVCYGMNGDGLPSRSNVVQLYKSNGIGAMRIYSADREALDALRGSGIDLALDVGERNDVGQLAANADSWVQDNVKAYYPDVKIKYIVVGNELTGTGDAA SILPAMQNVQAALASAGLADSIKVTTAIKMDTLAASSPPSAGVFTNPSVMEPIVRFLTGNGAPLLANVYPYFAYRDSQDIDLSYALFQPSSTTVSDPNGG GLSYTNLFDAMVDAVRAAVEKVSGGGSSVVDVVVSESGWPSDGGKGATVENARAYNQNLIDHVAQGTPKKPGQMEVYVFALFNENRKEGDATEKKFGLFN PR | |||
| Full Sequence |
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| Protein Sequence Length: 678 Download |
| MVELFGKEAS GKTTLALHVV KEAQKKGGCC AYIDAENAFN PSVAEAIGVN VEKLLIAQPD 60 SAENSLSIVN TLVGGSIDVV VVDSVAALIP RCELEGEIYM NSEDVQSRLM TRALRKIQHT 120 LSRSETLIIF VNQVRTKLSS NQTPGIFKEV ACGGNALGFY AAVRMRTSRR ELRYNEAQAT 180 GIGISVQIIK NKLAPATLKE AGIDIRFGKG ICYESEILEL ASSLGVIMKD DSGYWINGEF 240 LPNKAEAEKF LRENAAVADE ICGTMRRQFF ESLRLEIPSS VTIKASLQRC IFLHPDRVQV 300 QQIKLVAAED VYARRCSCAC SGFGHCSLRL LSFSMRSIGV CYGMNGDGLP SRSNVVQLYK 360 SNGIGAMRIY SADREALDAL RGSGIDLALD VGERNDVGQL AANADSWVQD NVKAYYPDVK 420 IKYIVVGNEL TGTGDAASIL PAMQNVQAAL ASAGLADSIK VTTAIKMDTL AASSPPSAGV 480 FTNPSVMEPI VRFLTGNGAP LLANVYPYFA YRDSQDIDLS YALFQPSSTT VSDPNGGGLS 540 YTNLFDAMVD AVRAAVEKVS GGGSSVVDVV VSESGWPSDG GKGATVENAR AYNQNLIDHV 600 AQGTPKKPGQ MEVYVFALFN ENRKEGDATE KKFGLFNPRQ DTGLPNHFLK NYSNTEYVLR 660 RTVYIMCLIW CLRIKIC* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR02012 | tigrfam_recA | 7.0e-67 | 1 | 261 | 266 | + protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage [DNA metabolism, DNA replication, recombination, and repair]. | ||
| pfam00154 | RecA | 1.0e-68 | 2 | 269 | 273 | + recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyzes an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination. | ||
| PRK09354 | recA | 4.0e-75 | 2 | 261 | 265 | + recombinase A; Provisional | ||
| cd00983 | recA | 3.0e-85 | 1 | 270 | 272 | + RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. | ||
| pfam00332 | Glyco_hydro_17 | 9.0e-130 | 338 | 638 | 308 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003697 | single-stranded DNA binding |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0005576 | extracellular region |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD10379.1 | 0 | 331 | 648 | 31 | 345 | beta-1,3-glucanase precursor [Oryza sativa Japonica Group] |
| DDBJ | BAB63855.1 | 0 | 335 | 677 | 1 | 343 | putative beta 1,3-glucanase [Oryza sativa Japonica Group] |
| GenBank | EEE55987.1 | 0 | 335 | 677 | 1 | 321 | hypothetical protein OsJ_04732 [Oryza sativa Japonica Group] |
| RefSeq | NP_001045374.1 | 0 | 360 | 677 | 1 | 318 | Os01g0944900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002459081.1 | 0 | 1 | 648 | 140 | 759 | hypothetical protein SORBIDRAFT_03g045520 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghs_B | 0 | 338 | 638 | 1 | 296 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 338 | 638 | 1 | 296 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 2cyg_A | 0 | 338 | 641 | 1 | 305 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_D | 0 | 338 | 640 | 2 | 307 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_C | 0 | 338 | 640 | 2 | 307 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO884376 | 299 | 1 | 295 | 0 |
| CK211028 | 245 | 28 | 272 | 0 |
| JK731426 | 272 | 1 | 271 | 0 |
| JK551876 | 182 | 90 | 271 | 0 |
| GD028258 | 211 | 90 | 299 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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