| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os01g72340.1 |
| Family | GH2 |
| Protein Properties | Length: 1118 Molecular Weight: 126241 Isoelectric Point: 6.1189 |
| Chromosome | Chromosome/Scaffold: 1 Start: 41954633 End: 41962787 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH2 | 87 | 983 | 0 |
| YVQTLSGYWKFLLASSPESVPEKFYDAYFNDSDWEALPVPSNWQMHGFDRPIYTNVTYPFTMNPPFVPNDNPTGCYRTVFRIPKEWKGRRILLHFEAVDS AFFAWVNGVPVGYSQDSRLPAEFEITDFCHPCDSEKENVLAVQVMRWSDGSYLEDQDHWWLSGIHRDVLLVSKPQIFITDYFFKATLDEGFRVADIEVEV EIDSQKQDREHVSTLSIEATLYDNYGPADVLTSDMSAASVANLKLKPASRPKHCYGFHGYVLGGKVENPKLWSSEHPNLYTLVVVLKDSNGKLIECESCQ VGIRNVVLAHKQMLVNGCPVVIRGVNRHEHHPRVGKTNLEACMIKDLVLMRQNNINAVRNSHYPQHPRWYELCDIFGLYVIDEANIETHGFDESSHFKHP TLEPFWASAMLDRVVGMVERDKNHACIIVWSLGNESSYGPNHSAMSGWIRGKDPTRPIHYEGGGSRTSSTDIVCPMYMRVWDILKIAQDPSENRPLILCE YSHAMGNSNGNIDAYWMAIDNTVGLQGGFIWDWVDQGLLKEDADGSKNWAYGGDFGDTPNDLNFCLNGIVWPDRTIHPAVHEVKYLYQPIKITMMDNMLK IENVHFFETTEALDFSWLLQGDGCALGSGSLNVPSIAPQSTHLINMKSSPWFTIWSTCVVKEIFLSINVKLRYQTQWAKDGHILASAQICLPPKKGFVPH AIALPRSSLVSERVGDHVLISKSNAWQIKVNSISGTIDSWKVNNIELMSKGIHPCFWRTPTDNDKGGFYTKPYVSRWREASLDNISFYSSQFSLKELPDQ TVEISTIYYGLPGNQPKPDETSLSDESESVLFRVQMRGRIYDSGDVILDYEVSPKNDLPPLPRVGVVFNADKSLSRAKWYGRGPFECYPDRKAAAHV | |||
| Full Sequence |
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| Protein Sequence Length: 1118 Download |
| MAVASASALF SAKNLPHKPW EDPSFFRWRK REAHVPLRSH DTPEGALKYW HERRNVNYLN 60 SDSAVWNDDA VRGALESAAF WSKGLPYVQT LSGYWKFLLA SSPESVPEKF YDAYFNDSDW 120 EALPVPSNWQ MHGFDRPIYT NVTYPFTMNP PFVPNDNPTG CYRTVFRIPK EWKGRRILLH 180 FEAVDSAFFA WVNGVPVGYS QDSRLPAEFE ITDFCHPCDS EKENVLAVQV MRWSDGSYLE 240 DQDHWWLSGI HRDVLLVSKP QIFITDYFFK ATLDEGFRVA DIEVEVEIDS QKQDREHVST 300 LSIEATLYDN YGPADVLTSD MSAASVANLK LKPASRPKHC YGFHGYVLGG KVENPKLWSS 360 EHPNLYTLVV VLKDSNGKLI ECESCQVGIR NVVLAHKQML VNGCPVVIRG VNRHEHHPRV 420 GKTNLEACMI KDLVLMRQNN INAVRNSHYP QHPRWYELCD IFGLYVIDEA NIETHGFDES 480 SHFKHPTLEP FWASAMLDRV VGMVERDKNH ACIIVWSLGN ESSYGPNHSA MSGWIRGKDP 540 TRPIHYEGGG SRTSSTDIVC PMYMRVWDIL KIAQDPSENR PLILCEYSHA MGNSNGNIDA 600 YWMAIDNTVG LQGGFIWDWV DQGLLKEDAD GSKNWAYGGD FGDTPNDLNF CLNGIVWPDR 660 TIHPAVHEVK YLYQPIKITM MDNMLKIENV HFFETTEALD FSWLLQGDGC ALGSGSLNVP 720 SIAPQSTHLI NMKSSPWFTI WSTCVVKEIF LSINVKLRYQ TQWAKDGHIL ASAQICLPPK 780 KGFVPHAIAL PRSSLVSERV GDHVLISKSN AWQIKVNSIS GTIDSWKVNN IELMSKGIHP 840 CFWRTPTDND KGGFYTKPYV SRWREASLDN ISFYSSQFSL KELPDQTVEI STIYYGLPGN 900 QPKPDETSLS DESESVLFRV QMRGRIYDSG DVILDYEVSP KNDLPPLPRV GVVFNADKSL 960 SRAKWYGRGP FECYPDRKAA AHVGVYESGV DELHVPYIVP GECGGRADVR WVALQDADGF 1020 GLFASAYGES PPMQVSASYY GAAELDRATH NHKLVKGDDI EVHLDHKHMG LGGDDSWSPC 1080 VHEQYLLPPA RYAFSVRLCP LLPSSSCHDI YHSQLPC* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart01038 | Bgal_small_N | 3.0e-89 | 808 | 1098 | 292 | + Beta galactosidase small chain. This domain comprises the small chain of dimeric beta-galactosidases EC:3.2.1.23. This domain is also found in single chain beta-galactosidase. | ||
| pfam02836 | Glyco_hydro_2_C | 5.0e-113 | 392 | 678 | 297 | + Glycosyl hydrolases family 2, TIM barrel domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| COG3250 | LacZ | 1.0e-159 | 88 | 981 | 904 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| PRK09525 | lacZ | 0 | 20 | 1100 | 1108 | + beta-D-galactosidase; Reviewed | ||
| PRK10340 | ebgA | 0 | 74 | 1085 | 1017 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005488 | binding |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC72176.1 | 0 | 1 | 1117 | 1 | 1032 | hypothetical protein OsI_05227 [Oryza sativa Indica Group] |
| RefSeq | NP_001045421.1 | 0 | 1 | 1117 | 1 | 1117 | Os01g0952600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002266400.1 | 0 | 18 | 1115 | 17 | 1112 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002266434.1 | 0 | 18 | 1115 | 17 | 1113 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| RefSeq | XP_002513059.1 | 0 | 6 | 1114 | 5 | 1107 | beta-galactosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1f4h_D | 0 | 88 | 1099 | 49 | 1019 | B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa |
| PDB | 1f4h_C | 0 | 88 | 1099 | 49 | 1019 | B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa |
| PDB | 1f4h_B | 0 | 88 | 1099 | 49 | 1019 | B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa |
| PDB | 1f4h_A | 0 | 88 | 1099 | 49 | 1019 | B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa |
| PDB | 1f4a_D | 0 | 88 | 1099 | 49 | 1019 | A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained Monomer- Orthorhombic) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| CB626663 | 279 | 39 | 317 | 0 |
| CB673522 | 264 | 633 | 896 | 0 |
| HO804274 | 394 | 130 | 515 | 0 |
| EG397069 | 272 | 401 | 672 | 0 |
| HO804274 | 47 | 504 | 549 | 0.0000002 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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