| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os02g03750.1 |
| Family | GH28 |
| Protein Properties | Length: 509 Molecular Weight: 54370.6 Isoelectric Point: 4.8739 |
| Chromosome | Chromosome/Scaffold: 2 Start: 1570082 End: 1574900 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 133 | 462 | 0 |
| KACSLNNAVFLVPGGRRYKVGAARFIGPCKNRMIIQIQGTIVAPDEPSEWDPASPRLWLLFSGLAGARIQGGGLIDGSGSKWWANSCKIDRSKPCKGAPT ALTIDSCRGVSVRNLRLQNAQQMHLTVSRSRDVRLASVRVDSPEDSPNTDGIHVADSTAVTIQSCRIATGDDCISISNGSFAVRMRDIDCGPGHGISIGS LGQGGAFAAVDGVSLDGARVARAQNGVRIKTWQGGAGYVRNVRFAGVRVDGVDHPIVIDQFYCDATRPCRNRTSNVRVSGVVFRNITGTARRAEAIRLAC SDAVPCVGIVLSDIDLRREDGGGEVQTVCN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 509 Download |
| MEAVGGRRRR PRTMLFLVLV ALMVIMAMAK TASGGGGDDG GAGGDHDHDH EQFLKLWNGR 60 GGADAKEDYL NWDDDDDDDE DEDEEEEEAE QVMAWAAKCR PPAGRNVVNV DSFGAAGDGC 120 SDDTEAFLNA WKKACSLNNA VFLVPGGRRY KVGAARFIGP CKNRMIIQIQ GTIVAPDEPS 180 EWDPASPRLW LLFSGLAGAR IQGGGLIDGS GSKWWANSCK IDRSKPCKGA PTALTIDSCR 240 GVSVRNLRLQ NAQQMHLTVS RSRDVRLASV RVDSPEDSPN TDGIHVADST AVTIQSCRIA 300 TGDDCISISN GSFAVRMRDI DCGPGHGISI GSLGQGGAFA AVDGVSLDGA RVARAQNGVR 360 IKTWQGGAGY VRNVRFAGVR VDGVDHPIVI DQFYCDATRP CRNRTSNVRV SGVVFRNITG 420 TARRAEAIRL ACSDAVPCVG IVLSDIDLRR EDGGGEVQTV CNCAMGFDDG RVSPAADCLR 480 TSPCGGMSPD DYHPDDKDDD DEVRHTEL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 1.0e-81 | 109 | 454 | 349 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 8.0e-88 | 106 | 483 | 385 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-93 | 140 | 462 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 1.0e-117 | 108 | 474 | 370 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 8.0e-131 | 96 | 482 | 388 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD07736.1 | 0 | 28 | 508 | 1 | 481 | putative polygalacturonase [Oryza sativa Japonica Group] |
| GenBank | EEC72414.1 | 0 | 28 | 508 | 1 | 481 | hypothetical protein OsI_05716 [Oryza sativa Indica Group] |
| RefSeq | NP_001045783.1 | 0 | 1 | 508 | 1 | 508 | Os02g0130200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002317091.1 | 0 | 80 | 481 | 9 | 405 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002453250.1 | 0 | 103 | 508 | 99 | 520 | hypothetical protein SORBIDRAFT_04g002530 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 5e-21 | 201 | 394 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 1e-20 | 204 | 461 | 77 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-20 | 204 | 461 | 77 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-20 | 204 | 461 | 77 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-20 | 204 | 461 | 77 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
