| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os02g12300.1 |
| Family | PL1 |
| Protein Properties | Length: 447 Molecular Weight: 49226.9 Isoelectric Point: 9.7976 |
| Chromosome | Chromosome/Scaffold: 2 Start: 6399355 End: 6402186 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 160 | 366 | 0 |
| MQAAPLWITFAKSMVIRLTQELLVASDKTIDGRGAQVHIARGGAGITVQFARNVIITSLHVHDVKHSDGGAVRDSPTHIGPRTRADGDGISLFAATDVWV DHVSMSMCEDGLIDVVQGSTGVTISNSHFTNHNDVMLFGASDSYPQDKVMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGMSPTILS QGNRYIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 447 Download |
| MDDQRLQWRK PGSFLLVAGV FLAAAAAVSN AGIGEFDEHW EKRRAAAEAA AEEVYKPDPF 60 NVTNEFNHAV IRSTERGVLR RELSGKNSKY KGPCLATNPI DRCWRCRKDW ATDRKRLARC 120 AMGFGRGATG GVRGKIYVVT DPGDGDAANP RYGTLRWGAM QAAPLWITFA KSMVIRLTQE 180 LLVASDKTID GRGAQVHIAR GGAGITVQFA RNVIITSLHV HDVKHSDGGA VRDSPTHIGP 240 RTRADGDGIS LFAATDVWVD HVSMSMCEDG LIDVVQGSTG VTISNSHFTN HNDVMLFGAS 300 DSYPQDKVMQ ITVAFNHFGR GLVQRMPRCR WGFFHVVNND YTHWLMYAIG GGMSPTILSQ 360 GNRYIAPPNI AAKLITRHYA PEWEWKNWAW RSDGDLFMNG AYFQASNGAI NRKVKGSDMV 420 KPKPGSYVRR LTRFAGALSC RPGEPC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 0.0009 | 164 | 293 | 133 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| pfam04431 | Pec_lyase_N | 2.0e-14 | 33 | 83 | 53 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| COG3866 | PelB | 2.0e-30 | 180 | 362 | 195 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-67 | 178 | 364 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-76 | 173 | 368 | 207 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008150 | biological_process |
| GO:0008152 | metabolic process |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF87417.1 | 0 | 5 | 446 | 6 | 444 | unknown [Zea mays] |
| GenBank | EAY85003.1 | 0 | 1 | 446 | 1 | 439 | hypothetical protein OsI_06363 [Oryza sativa Indica Group] |
| GenBank | EEE56553.1 | 0 | 1 | 446 | 1 | 410 | hypothetical protein OsJ_05879 [Oryza sativa Japonica Group] |
| RefSeq | NP_001046281.1 | 0 | 1 | 446 | 1 | 446 | Os02g0214400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002453531.1 | 0 | 4 | 446 | 6 | 445 | hypothetical protein SORBIDRAFT_04g007450 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 98 | 439 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 98 | 439 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-19 | 167 | 355 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 0.00000000000001 | 179 | 364 | 74 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1vbl_A | 0.0000000000008 | 181 | 377 | 128 | 343 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
