| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os02g15690.1 |
| Family | GH28 |
| Protein Properties | Length: 444 Molecular Weight: 47915.3 Isoelectric Point: 7.8068 |
| Chromosome | Chromosome/Scaffold: 2 Start: 8834023 End: 8837535 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 73 | 420 | 0 |
| RRRGGTTLLVPAGTWLTGSFNLTSHMTLFLARGAVLKATQETRSWPLAEPLPSYGRGRELPGARYTSFIHGDGLRDIVITGDKGIIDGQGDVWWNMWRQR TLQHTRPNLLEFMHSSGIHISNIVLKNSPFWNIHPVYCDNVVITNMMIIAPHDSPNTDGVDPDSSTNVCIEDSYISTGDDLVAIKSGWDEYGIAYGRPSS GITIRRVRGSSPFSGIAIGSEASGGVSNVLVEDCSIFNSGYGIHIKTNIGRGGFIRNITVDNVRMNSVRNGLRIAGDVGDHPDEHFSQLALPTVDAVSIK NVWGVNVQQPGSIEGIRNSPFTRICLANVKLFGWRNNAAWKCRDVHGA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 444 Download |
| MAALHGHGFA VTVLLVVLLV QCDAAEATTC AGAVPARPRP ETVSIAEFGG VGDGRTVNTW 60 AFHKAVYRIQ HQRRRGGTTL LVPAGTWLTG SFNLTSHMTL FLARGAVLKA TQETRSWPLA 120 EPLPSYGRGR ELPGARYTSF IHGDGLRDIV ITGDKGIIDG QGDVWWNMWR QRTLQHTRPN 180 LLEFMHSSGI HISNIVLKNS PFWNIHPVYC DNVVITNMMI IAPHDSPNTD GVDPDSSTNV 240 CIEDSYISTG DDLVAIKSGW DEYGIAYGRP SSGITIRRVR GSSPFSGIAI GSEASGGVSN 300 VLVEDCSIFN SGYGIHIKTN IGRGGFIRNI TVDNVRMNSV RNGLRIAGDV GDHPDEHFSQ 360 LALPTVDAVS IKNVWGVNVQ QPGSIEGIRN SPFTRICLAN VKLFGWRNNA AWKCRDVHGA 420 ALGVQPGPCA ELTTSLSSGF CSY* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 3.0e-24 | 31 | 430 | 416 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 4.0e-29 | 43 | 438 | 416 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 3.0e-30 | 40 | 405 | 378 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-33 | 140 | 418 | 283 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 9.0e-54 | 22 | 370 | 380 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN33336.1 | 0 | 14 | 442 | 19 | 449 | unknown [Zea mays] |
| GenBank | ACN36471.1 | 0 | 98 | 442 | 1 | 345 | unknown [Zea mays] |
| GenBank | EAY85246.1 | 0 | 1 | 443 | 1 | 443 | hypothetical protein OsI_06620 [Oryza sativa Indica Group] |
| RefSeq | NP_001046468.1 | 0 | 1 | 443 | 1 | 443 | Os02g0256100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002451891.1 | 0 | 28 | 438 | 30 | 442 | hypothetical protein SORBIDRAFT_04g009310 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 4.99983e-42 | 35 | 407 | 21 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 4.99983e-42 | 35 | 407 | 21 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 4.99983e-42 | 35 | 407 | 21 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 4.99983e-42 | 35 | 407 | 21 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 2e-20 | 87 | 418 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
