| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os02g46310.1 |
| Family | CE8 |
| Protein Properties | Length: 257 Molecular Weight: 28023.9 Isoelectric Point: 8.6448 |
| Chromosome | Chromosome/Scaffold: 2 Start: 28230669 End: 28232390 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 100 | 241 | 3.8e-40 |
| RVSGSIDFIFGNGRSFYEKCILNSVATSDGINGAICAQGREYAADDTGFAFVNCRITGSGLILLGRAWRPYSRVVFAHTDMPGIIVPRVGATGTTRNEMR TTMFYGEYMCTGVGANMTGRVPYAKPLTEQQAQIYLDASYVD | |||
| Full Sequence |
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| Protein Sequence Length: 257 Download |
| MGFAPPMERY LWTPRCCRLW KCMAIPKVTV NFSKPNVTFQ GQGFESTIIV WNNSAKNTGT 60 FYSATVDVFA TGFVTNNISF KNASPAPKPG DRDGQAVAIR VSGSIDFIFG NGRSFYEKCI 120 LNSVATSDGI NGAICAQGRE YAADDTGFAF VNCRITGSGL ILLGRAWRPY SRVVFAHTDM 180 PGIIVPRVGA TGTTRNEMRT TMFYGEYMCT GVGANMTGRV PYAKPLTEQQ AQIYLDASYV 240 DADGWLKPFN DSLIVN* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02634 | PLN02634 | 8.0e-51 | 25 | 248 | 264 | + probable pectinesterase | ||
| PLN02671 | PLN02671 | 3.0e-51 | 27 | 247 | 263 | + pectinesterase | ||
| PLN02665 | PLN02665 | 6.0e-64 | 27 | 248 | 259 | + pectinesterase family protein | ||
| PLN02682 | PLN02682 | 7.0e-74 | 27 | 248 | 264 | + pectinesterase family protein | ||
| PLN02304 | PLN02304 | 3.0e-91 | 27 | 251 | 264 | + probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0005623 | cell |
| GO:0008150 | biological_process |
| GO:0008152 | metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD07663.1 | 0 | 1 | 256 | 1 | 256 | putative pectin methylesterase [Oryza sativa Japonica Group] |
| GenBank | EAZ24228.1 | 0 | 4 | 256 | 213 | 465 | hypothetical protein OsJ_07976 [Oryza sativa Japonica Group] |
| GenBank | EEC83093.1 | 0 | 27 | 254 | 127 | 392 | hypothetical protein OsI_28228 [Oryza sativa Indica Group] |
| RefSeq | XP_002267842.1 | 0 | 27 | 249 | 136 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002445213.1 | 0 | 21 | 254 | 126 | 397 | hypothetical protein SORBIDRAFT_07g006050 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 2e-21 | 9 | 247 | 36 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0.00000000000002 | 28 | 247 | 46 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GE593794 | 248 | 27 | 235 | 0 |
| EE623451 | 257 | 28 | 246 | 0 |
| GR152847 | 236 | 27 | 228 | 0 |
| EE616069 | 252 | 28 | 241 | 0 |
| DY831730 | 256 | 27 | 247 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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