| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os02g54030.1 |
| Family | GH28 |
| Protein Properties | Length: 278 Molecular Weight: 30781.8 Isoelectric Point: 6.2459 |
| Chromosome | Chromosome/Scaffold: 2 Start: 33097336 End: 33098858 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 3 | 236 | 0 |
| SKDIIVANITLKNSPFWHFHPYDCTNITVSNVTILAPISSAPNTDGIDPDSCQDVLIENCYISVGDDAIAVKSGWDQYGIAYGRPSRNIVIRNVMARSLV SAGISIGSEMSGGIANVTVEDVRIWESRRGLRIKTAIGRGGYIRDISYRNITFDNVRAGIVIKVDYNEHADDGYDRDAFPDITNISFKEIHGRGVRVPVR AHGSSDIPIKDISFQDMSIGISYKKKHIFQCSFI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 278 Download |
| MWSKDIIVAN ITLKNSPFWH FHPYDCTNIT VSNVTILAPI SSAPNTDGID PDSCQDVLIE 60 NCYISVGDDA IAVKSGWDQY GIAYGRPSRN IVIRNVMARS LVSAGISIGS EMSGGIANVT 120 VEDVRIWESR RGLRIKTAIG RGGYIRDISY RNITFDNVRA GIVIKVDYNE HADDGYDRDA 180 FPDITNISFK EIHGRGVRVP VRAHGSSDIP IKDISFQDMS IGISYKKKHI FQCSFIEGRV 240 IGSVFPKPCE NLDLYNEQGQ LVKRAAMVNS TEVDYDI* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 7.0e-18 | 4 | 249 | 252 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 6.0e-18 | 3 | 194 | 194 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 5.0e-21 | 8 | 221 | 220 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-26 | 3 | 221 | 222 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 9.0e-34 | 3 | 212 | 214 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005739 | mitochondrion |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF10222.2 | 0 | 1 | 277 | 9 | 285 | Os02g0781000 [Oryza sativa Japonica Group] |
| GenBank | EAY87758.1 | 0 | 1 | 267 | 242 | 508 | hypothetical protein OsI_09176 [Oryza sativa Indica Group] |
| GenBank | EAZ24830.1 | 0 | 1 | 267 | 186 | 452 | hypothetical protein OsJ_08610 [Oryza sativa Japonica Group] |
| RefSeq | NP_001048308.1 | 0 | 1 | 277 | 1 | 277 | Os02g0781000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001140630.1 | 0 | 1 | 277 | 219 | 495 | hypothetical protein LOC100272705 [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 4e-32 | 4 | 221 | 199 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 4e-32 | 4 | 221 | 199 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 4e-32 | 4 | 221 | 199 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 4e-32 | 4 | 221 | 199 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 2e-19 | 3 | 212 | 159 | 353 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| JG891255 | 257 | 21 | 277 | 0 |
| JG868352 | 258 | 21 | 278 | 0 |
| HO272590 | 250 | 1 | 250 | 0 |
| FL915753 | 234 | 22 | 255 | 0 |
| FF585893 | 236 | 42 | 277 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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