| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os03g03350.1 |
| Family | GH28 |
| Protein Properties | Length: 459 Molecular Weight: 48897.5 Isoelectric Point: 5.8336 |
| Chromosome | Chromosome/Scaffold: 3 Start: 1430639 End: 1433585 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 70 | 420 | 0 |
| AGDGGAALVVPKGKWLTGPFNLTSHFTLFLDHGAEILASQNLEDWPLIAPLPSYGRGRDEPGPRYSNFIAGSNLTDVIITGRNGTINGQGQVWWDKFHAK ELTYTRGYLLELLYSNNIIISNVTFVDSPSWNLHPTYCTNVTISGITILAPLNSPNTDGIDPDSSSHVKIEDSYIVSGDDCIAVKSGWDQYGIKFNMPSQ HILIRRLTCISPTSAMIALGSEMSGGIRDVRAVDNVAIDTESAVRIKSGVGRGGYVKDVFVRGLSLHTMKWVFWMTGNYGQHPDNSSDPNALPEVTGINY SDVFAENVTMAGRMEGIPNDPYTGICMSNVTAQLAPDAKKLQWNCTDVKGV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 459 Download |
| MAKKTILQVV CAVALVALCA CGVAASPSSP AGAGCRKHVA RITEYGGVGD GRRSNTAAFA 60 KAVADLSLRA GDGGAALVVP KGKWLTGPFN LTSHFTLFLD HGAEILASQN LEDWPLIAPL 120 PSYGRGRDEP GPRYSNFIAG SNLTDVIITG RNGTINGQGQ VWWDKFHAKE LTYTRGYLLE 180 LLYSNNIIIS NVTFVDSPSW NLHPTYCTNV TISGITILAP LNSPNTDGID PDSSSHVKIE 240 DSYIVSGDDC IAVKSGWDQY GIKFNMPSQH ILIRRLTCIS PTSAMIALGS EMSGGIRDVR 300 AVDNVAIDTE SAVRIKSGVG RGGYVKDVFV RGLSLHTMKW VFWMTGNYGQ HPDNSSDPNA 360 LPEVTGINYS DVFAENVTMA GRMEGIPNDP YTGICMSNVT AQLAPDAKKL QWNCTDVKGV 420 ASDVSPVPCP ELGAAGKPCA FPEEELVIGP PELPTCSY* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-22 | 42 | 399 | 371 | + polygalacturonase ADPG | ||
| PLN03010 | PLN03010 | 1.0e-24 | 42 | 335 | 306 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 4.0e-29 | 42 | 432 | 407 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-30 | 136 | 328 | 200 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 6.0e-52 | 42 | 342 | 325 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001048813.1 | 0 | 1 | 458 | 1 | 458 | Os03g0124900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151102.1 | 0 | 31 | 458 | 36 | 463 | glycoside hydrolase, family 28 [Zea mays] |
| RefSeq | XP_002303605.1 | 0 | 15 | 457 | 13 | 465 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002468601.1 | 0 | 32 | 458 | 37 | 463 | hypothetical protein SORBIDRAFT_01g048880 [Sorghum bicolor] |
| RefSeq | XP_002509850.1 | 0 | 31 | 457 | 44 | 474 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 5e-40 | 42 | 412 | 30 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 5e-40 | 42 | 412 | 30 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 5e-40 | 42 | 412 | 30 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 5e-40 | 42 | 412 | 30 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.00000000000001 | 57 | 375 | 22 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
