y
Basic Information | |
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Species | Oryza sativa |
Cazyme ID | LOC_Os03g05060.2 |
Family | GT47 |
Protein Properties | Length: 472 Molecular Weight: 53339.8 Isoelectric Point: 8.9488 |
Chromosome | Chromosome/Scaffold: 3 Start: 2466458 End: 2468340 |
Description | Exostosin family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 52 | 396 | 0 |
CRGRYIYVHDLPRRFNDDILRDCRKTRDHWPDMCGFVSNAGLGRPLVDRADGVLTGEAGWYGTHQFALDAIFHNRMKQYECLTNQSAVADAVFVPFYAGF DFVRYHWGYDNATRDAASVDLTQWLMRRPEWRRMGGRDHFLVAGRTGWDFRRDTNINPNWGTNLLVMPGGRDMSVLVLESSLLNGSDYAVPYPTYFHPRS DADVFRWQDRVRGMQRRWLMAFVGAPRPDDPKNIRAQIIAQCNATSACSQLGCAFGSSQCHSPGNIMRLFQKATFCLQPPGDSYTRRSVFDSMVAGCIPV FFHNATAYLQYAWHLPREHAKYSVFISEHDVRAGNVSIEATLRAI |
Full Sequence |
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Protein Sequence Length: 472 Download |
MEKVAVGLLP PLRFIAVLAV VSWTSFIYCH FSLLSGGLLL GHGGGDDGAD PCRGRYIYVH 60 DLPRRFNDDI LRDCRKTRDH WPDMCGFVSN AGLGRPLVDR ADGVLTGEAG WYGTHQFALD 120 AIFHNRMKQY ECLTNQSAVA DAVFVPFYAG FDFVRYHWGY DNATRDAASV DLTQWLMRRP 180 EWRRMGGRDH FLVAGRTGWD FRRDTNINPN WGTNLLVMPG GRDMSVLVLE SSLLNGSDYA 240 VPYPTYFHPR SDADVFRWQD RVRGMQRRWL MAFVGAPRPD DPKNIRAQII AQCNATSACS 300 QLGCAFGSSQ CHSPGNIMRL FQKATFCLQP PGDSYTRRSV FDSMVAGCIP VFFHNATAYL 360 QYAWHLPREH AKYSVFISEH DVRAGNVSIE ATLRAIPAAT VERMREEVIR LIPSVIYADP 420 RSKLETVRDA FDVAVEGIID RIAMTRGGYA RSWLRPKQSR QALDARRRRL S* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 7.0e-68 | 51 | 396 | 355 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0003824 | catalytic activity |
GO:0005794 | Golgi apparatus |
GO:0005975 | carbohydrate metabolic process |
GO:0007165 | signal transduction |
GO:0008152 | metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO17347.1 | 0 | 1 | 471 | 178 | 648 | Hypothetical protein [Oryza sativa Japonica Group] |
GenBank | EEC74505.1 | 0 | 1 | 471 | 212 | 682 | hypothetical protein OsI_09985 [Oryza sativa Indica Group] |
GenBank | EEE58313.1 | 0 | 1 | 471 | 212 | 682 | hypothetical protein OsJ_09380 [Oryza sativa Japonica Group] |
RefSeq | NP_001048943.1 | 0 | 1 | 471 | 34 | 504 | Os03g0144300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002468519.1 | 0 | 1 | 448 | 1 | 452 | hypothetical protein SORBIDRAFT_01g047290 [Sorghum bicolor] |