| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os03g10440.1 |
| Family | CBM22 |
| Protein Properties | Length: 575 Molecular Weight: 62906.9 Isoelectric Point: 6.2445 |
| Chromosome | Chromosome/Scaffold: 3 Start: 5317215 End: 5321081 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM22 | 51 | 167 | 3.3e-21 |
| VVRNADFSAGLHGWSAFGYGSLAEGSSPAGNRYAVATNRTRPYQSVSQKVLLQNDTHYTLSAWLQVSDGVADVRVVVKAAGDFIHAGGVAAKSGCWSMLK GGLTTVSGGRAEIYFES | |||
| GH10 | 227 | 490 | 0 |
| RNGFPLGAAMSGEILRNPSYQRWFASRFTVTTFENEMKWYSTEPAPGREDYSVPDAMLEFARSHGIAVRGHNVFWDDPNQQPRWVQGLPYPQLLAAASRR IRSVVARYAGKLIAWDVVNENLHFSFFERRFGWDASTAFYAAARMLDTGSTLMFMNEYNTLEQPGDMAALPARYVQRLKQIIGGYPQNGAGMAIGLEGHF TAPVNIPYMRAALDTLAQAGVPVWLTEVDVGGGASQAYYLEEILREAYAHPAVQGVILWAAWRP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 575 Download |
| MKVDPMGKLL FLLAWITLLQ GCCMVKSFSY DYSSSIECLP EPPEPQYGGG VVRNADFSAG 60 LHGWSAFGYG SLAEGSSPAG NRYAVATNRT RPYQSVSQKV LLQNDTHYTL SAWLQVSDGV 120 ADVRVVVKAA GDFIHAGGVA AKSGCWSMLK GGLTTVSGGR AEIYFESNAT ADIWVDSVSL 180 KPFTKEEWSN HRDASASTAR RKTVRLQATD SAGNPLPGAA VSLENVRNGF PLGAAMSGEI 240 LRNPSYQRWF ASRFTVTTFE NEMKWYSTEP APGREDYSVP DAMLEFARSH GIAVRGHNVF 300 WDDPNQQPRW VQGLPYPQLL AAASRRIRSV VARYAGKLIA WDVVNENLHF SFFERRFGWD 360 ASTAFYAAAR MLDTGSTLMF MNEYNTLEQP GDMAALPARY VQRLKQIIGG YPQNGAGMAI 420 GLEGHFTAPV NIPYMRAALD TLAQAGVPVW LTEVDVGGGA SQAYYLEEIL REAYAHPAVQ 480 GVILWAAWRP QGCYVMCLTD NDFNNLPQGD VVDRLITEWS TAPRAGTTDA EGFFQAELAH 540 GEYKVTVTHP SLNTSVSQSV KVEMGSGSHY FIQV* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13620 | CarboxypepD_reg | 0.007 | 514 | 566 | 54 | + Carboxypeptidase regulatory-like domain. | ||
| pfam02018 | CBM_4_9 | 8.0e-5 | 49 | 113 | 70 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 1.0e-28 | 233 | 485 | 275 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 9.0e-47 | 230 | 504 | 299 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 3.0e-68 | 263 | 512 | 274 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005488 | binding |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF94504.1 | 0 | 6 | 574 | 1 | 567 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ACG36704.1 | 0 | 8 | 574 | 5 | 574 | 1,4-beta-xylanase [Zea mays] |
| GenBank | EAY88933.1 | 0 | 6 | 574 | 1 | 567 | hypothetical protein OsI_10417 [Oryza sativa Indica Group] |
| RefSeq | NP_001130600.1 | 0 | 8 | 574 | 24 | 593 | hypothetical protein LOC100191699 [Zea mays] |
| RefSeq | XP_002468320.1 | 0 | 8 | 574 | 10 | 571 | hypothetical protein SORBIDRAFT_01g043760 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 3e-28 | 232 | 512 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1ta3_B | 6e-24 | 232 | 489 | 17 | 277 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
| PDB | 1tux_A | 1e-22 | 254 | 516 | 40 | 301 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1v0n_A | 1e-21 | 227 | 491 | 11 | 277 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1v0m_A | 1e-21 | 227 | 491 | 11 | 277 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
