| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os03g10478.1 |
| Family | CBM22 |
| Protein Properties | Length: 580 Molecular Weight: 63836.9 Isoelectric Point: 7.082 |
| Chromosome | Chromosome/Scaffold: 3 Start: 5331110 End: 5335911 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 55 | 172 | 1e-22 |
| IIRNGDFSAGLQGWSAFGYGSLAVGSSPAGNRYAVATNRTRPYQSVSQKVLLQDDTHYTLSAWLQVSDGIADVRAVVKTAGGDFIHSGGVEARSGCWSIL KGGLTAAAAGQAELYFES | |||
| GH10 | 232 | 497 | 0 |
| RNGFPLGSAMSKEILTNPGYQRWFTSRFTVTTFENEMKWYSTEAIPGREDYSVPDAMLRFAKSHGIAVRGHNIFWDDPSTQMGWVKALSGEQLRRATEKR IKSVMSRYSGQVIAWDVVNENLHFDFFEGRFGWEASAAFYRKAHQMDGGALMSMNEFNTLEQPGDLTVLPGKYLRKLWQIKAFPGNGNAARMGIGLEGHF SAQPNIPYIRAALDTMAQANAPIWLTEIDVAPGPDQARHLEQILREVYAHPAVHGIILWTAWHPQG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 580 Download |
| MRRRASAVFL LAWLVAGVVK AAEAASGMAR PLAYDYSSSS ECLPEPMDAH YGGGIIRNGD 60 FSAGLQGWSA FGYGSLAVGS SPAGNRYAVA TNRTRPYQSV SQKVLLQDDT HYTLSAWLQV 120 SDGIADVRAV VKTAGGDFIH SGGVEARSGC WSILKGGLTA AAAGQAELYF ESNATVDIWV 180 DNVSLQPFSR EEWSAHHGAA IKKARKKTVR LQARDAAGNP VAGARMHIEH VRNGFPLGSA 240 MSKEILTNPG YQRWFTSRFT VTTFENEMKW YSTEAIPGRE DYSVPDAMLR FAKSHGIAVR 300 GHNIFWDDPS TQMGWVKALS GEQLRRATEK RIKSVMSRYS GQVIAWDVVN ENLHFDFFEG 360 RFGWEASAAF YRKAHQMDGG ALMSMNEFNT LEQPGDLTVL PGKYLRKLWQ IKAFPGNGNA 420 ARMGIGLEGH FSAQPNIPYI RAALDTMAQA NAPIWLTEID VAPGPDQARH LEQILREVYA 480 HPAVHGIILW TAWHPQGCYV MCLTDNNFKN LPAGDVVDKL IWEWKTRSHV GVADADGYYE 540 TELFHGDYKV TVTHPAANST VAQSLSVDRE SDNEFTIHV* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 2.0e-7 | 53 | 172 | 129 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 1.0e-28 | 259 | 490 | 253 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 3.0e-39 | 235 | 517 | 311 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 4.0e-69 | 268 | 517 | 273 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005488 | binding |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF94510.1 | 0 | 1 | 579 | 1 | 579 | 1,4-beta-xylanase, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEC74705.1 | 0 | 1 | 579 | 1 | 579 | hypothetical protein OsI_10421 [Oryza sativa Indica Group] |
| GenBank | EEE58525.1 | 0 | 1 | 579 | 1 | 579 | hypothetical protein OsJ_09814 [Oryza sativa Japonica Group] |
| GenBank | EEE58525.1 | 0 | 24 | 467 | 557 | 986 | hypothetical protein OsJ_09814 [Oryza sativa Japonica Group] |
| RefSeq | XP_002465685.1 | 0 | 4 | 579 | 11 | 584 | hypothetical protein SORBIDRAFT_01g043720 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 1e-23 | 237 | 517 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0n_A | 4e-20 | 232 | 490 | 11 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0m_A | 4e-20 | 232 | 490 | 11 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0l_A | 4e-20 | 232 | 490 | 11 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0k_A | 4e-20 | 232 | 490 | 11 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
