y
Basic Information | |
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Species | Oryza sativa |
Cazyme ID | LOC_Os03g11760.1 |
Family | GH28 |
Protein Properties | Length: 439 Molecular Weight: 47887.2 Isoelectric Point: 6.2636 |
Chromosome | Chromosome/Scaffold: 3 Start: 6152114 End: 6155183 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 89 | 421 | 0 |
KEACNSSDYPSVLLVPEGKTYLLMPVSFNGPCRATTITATIRGTLEAPSNRSVWLDRDLQEWITFDNIDHLRVLGGGTLNGNGHQWWINSCKTNRSMRCV TGPTALYFRRCNHLVVEGLQIRDSMQMHVVIAYSWRVLVSRLLITAPGWSPNTDGIHVSNSREVLMSGCIISTGDDCISIVTGSMFIRATGIFCGPGHGI SIGSLGANKSWAHVSDVLVEKATLVGTTNGVRIKTWQGGDGHAERITFQDITMHNVTNPVIIDQNYCDSMTPCHEQGSAVAINNIRYRNIRGTSSSKVAI NFVCSNSVHCDGIVMQDVSLVGEGSYVSCSYMN |
Full Sequence |
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Protein Sequence Length: 439 Download |
MGPRKLHLAS ISALSIFLYV FAHTNSAQAF PVADGTYPPE AEGPAAESSD MDEQLELTPG 60 PQPRVVDVDD YRARADAGDH TEAFLQAWKE ACNSSDYPSV LLVPEGKTYL LMPVSFNGPC 120 RATTITATIR GTLEAPSNRS VWLDRDLQEW ITFDNIDHLR VLGGGTLNGN GHQWWINSCK 180 TNRSMRCVTG PTALYFRRCN HLVVEGLQIR DSMQMHVVIA YSWRVLVSRL LITAPGWSPN 240 TDGIHVSNSR EVLMSGCIIS TGDDCISIVT GSMFIRATGI FCGPGHGISI GSLGANKSWA 300 HVSDVLVEKA TLVGTTNGVR IKTWQGGDGH AERITFQDIT MHNVTNPVII DQNYCDSMTP 360 CHEQGSAVAI NNIRYRNIRG TSSSKVAINF VCSNSVHCDG IVMQDVSLVG EGSYVSCSYM 420 NARVVELGYN FPYCRAEM* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 6.0e-86 | 80 | 432 | 359 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 3.0e-92 | 81 | 421 | 344 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-105 | 94 | 419 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 7.0e-113 | 81 | 434 | 356 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-125 | 81 | 408 | 328 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0000003 | reproduction |
GO:0004650 | polygalacturonase activity |
GO:0005623 | cell |
GO:0005975 | carbohydrate metabolic process |
GO:0007275 | multicellular organismal development |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACL53778.1 | 0 | 40 | 438 | 34 | 437 | unknown [Zea mays] |
GenBank | EAY89054.1 | 0 | 1 | 438 | 1 | 411 | hypothetical protein OsI_10538 [Oryza sativa Indica Group] |
GenBank | EAZ26072.1 | 0 | 1 | 438 | 1 | 411 | hypothetical protein OsJ_09925 [Oryza sativa Japonica Group] |
RefSeq | NP_001049387.1 | 0 | 1 | 438 | 1 | 438 | Os03g0216800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002468269.1 | 0 | 39 | 438 | 1 | 398 | hypothetical protein SORBIDRAFT_01g042735 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 4e-18 | 164 | 381 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-18 | 164 | 381 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-18 | 164 | 381 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-18 | 164 | 381 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 4e-18 | 164 | 381 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |