| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os03g13570.1 |
| Family | GH16 |
| Protein Properties | Length: 339 Molecular Weight: 37024.6 Isoelectric Point: 7.4005 |
| Chromosome | Chromosome/Scaffold: 3 Start: 7339383 End: 7342872 |
| Description | endoxyloglucan transferase A3 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH16 | 56 | 230 | 2.6e-27 |
| GDSNLMLHGDGKRVHISLDERTGAGFASQGAYHHGFFSASIKLPADHTAGVVVAFYMSNGDVYERTHDELDFEFLGNVRGREWRVQTNVYGNGSTAAGRE ERYGLWFDPTQDFHRYAIRWSHDTIIFYVDETPIREVVRTASMGAQFPSKPMSLYATIWDGSSWATSGGRYKVNY | |||
| Full Sequence |
|---|
| Protein Sequence Length: 339 Download |
| MAMARCSLLP ILAAVLLAAS LSLPPRAAAY AAMVDSLLPA SATALSFEEG YTQLFGDSNL 60 MLHGDGKRVH ISLDERTGAG FASQGAYHHG FFSASIKLPA DHTAGVVVAF YMSNGDVYER 120 THDELDFEFL GNVRGREWRV QTNVYGNGST AAGREERYGL WFDPTQDFHR YAIRWSHDTI 180 IFYVDETPIR EVVRTASMGA QFPSKPMSLY ATIWDGSSWA TSGGRYKVNY KYAPYVAEFT 240 DLLLHGCPAG SPPPCEGAAA SATMPPGQRS AMERFRARHM TYGYCYDRVR YHAPLPECSV 300 GAEAEAFLPS GEARSTDRRG GRHGKRHRRA GGGVDSAL* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00413 | Glyco_hydrolase_16 | 2.0e-23 | 76 | 225 | 154 | + glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues. | ||
| cd02175 | GH16_lichenase | 2.0e-24 | 41 | 220 | 184 | + lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure. | ||
| PLN03161 | PLN03161 | 5.0e-52 | 55 | 299 | 261 | + Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional | ||
| pfam00722 | Glyco_hydro_16 | 1.0e-68 | 47 | 232 | 186 | + Glycosyl hydrolases family 16. | ||
| cd02176 | GH16_XET | 2.0e-129 | 42 | 298 | 267 | + Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005576 | extracellular region |
| GO:0005618 | cell wall |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY89191.1 | 0 | 1 | 338 | 1 | 338 | hypothetical protein OsI_10687 [Oryza sativa Indica Group] |
| RefSeq | NP_001049503.1 | 0 | 1 | 338 | 1 | 338 | Os03g0239000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001064056.1 | 0 | 46 | 317 | 44 | 322 | Os10g0117000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002315842.1 | 0 | 40 | 310 | 29 | 306 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002465580.1 | 0 | 39 | 315 | 33 | 322 | hypothetical protein SORBIDRAFT_01g041510 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2uwc_B | 0 | 40 | 298 | 12 | 271 | A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase Isoform Nxg2 |
| PDB | 2uwc_A | 0 | 40 | 298 | 12 | 271 | A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase Isoform Nxg2 |
| PDB | 2uwa_C | 0 | 40 | 298 | 15 | 274 | A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase Isoform Nxg1 |
| PDB | 2uwa_B | 0 | 40 | 298 | 15 | 274 | A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase Isoform Nxg1 |
| PDB | 2uwa_A | 0 | 40 | 298 | 15 | 274 | A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase Isoform Nxg1 |
