| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os03g14010.1 |
| Family | GH10 |
| Protein Properties | Length: 564 Molecular Weight: 63120.4 Isoelectric Point: 6.5733 |
| Chromosome | Chromosome/Scaffold: 3 Start: 7599694 End: 7603064 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH10 | 217 | 477 | 0 |
| QTAKDFPFGSAIASTILGNQAYQKWFVDRFNAAVFEDELKWYSTEPMSGQLRFDVPDQMLAFVRSHRVMVRGHNIFWENQDATPSWVKGLSPDDLRAAVN GRIQNLMTRYRGEFAHWDVNNEMLHYNFYEQRLGANASVEFFSVAQDADPLATLFMNEFNVIETCDDVSSTVDTYVAKLKDLRAGGAVLEGIGLEGHFLK PNIPLMRAVLDKLATLGLPIWFTEIDISNRYDAQTQAVYLEQVLREAYSHPAVTGVMLWTA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 564 Download |
| MRRFSLHAVR YLVLWMLLRC GRELVAAVPP GQSRNHGWYD YTAYTDCRGQ PEPALYNGGI 60 LRFGNSDDPT GYRTTETGVF SPAFVVYNLN KTTMYTFSSW VKLEGASSAL ITARLALDNA 120 GARCIGTVLA RNDCWAFLKG GFVLDWPTQT SVIFFQNADK TPMKITVASG SLQPFTSDQW 180 SMHQKDTIRK RRKRMATIHV ADQQGGRVVG ASVSVRQTAK DFPFGSAIAS TILGNQAYQK 240 WFVDRFNAAV FEDELKWYST EPMSGQLRFD VPDQMLAFVR SHRVMVRGHN IFWENQDATP 300 SWVKGLSPDD LRAAVNGRIQ NLMTRYRGEF AHWDVNNEML HYNFYEQRLG ANASVEFFSV 360 AQDADPLATL FMNEFNVIET CDDVSSTVDT YVAKLKDLRA GGAVLEGIGL EGHFLKPNIP 420 LMRAVLDKLA TLGLPIWFTE IDISNRYDAQ TQAVYLEQVL REAYSHPAVT GVMLWTALHP 480 NGCYQMCLTD WNLNNLPVGD VVDRLLQEWQ TGQAAGPTDA HGAYSFSGFL GEYIVSVTYA 540 NSTSQATFSL SPGDETRHIN IQI* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 7.0e-37 | 219 | 475 | 279 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 2.0e-59 | 219 | 475 | 273 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 2.0e-75 | 255 | 502 | 269 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005488 | binding |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF94920.1 | 0 | 1 | 563 | 1 | 563 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ABF94921.1 | 0 | 1 | 563 | 1 | 558 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEC74851.1 | 0 | 1 | 563 | 160 | 717 | hypothetical protein OsI_10717 [Oryza sativa Indica Group] |
| RefSeq | NP_001140909.1 | 0 | 1 | 563 | 3 | 560 | hypothetical protein LOC100272986 [Zea mays] |
| RefSeq | XP_002468186.1 | 0 | 1 | 563 | 3 | 560 | hypothetical protein SORBIDRAFT_01g041310 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 5e-30 | 224 | 475 | 15 | 268 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v6y_A | 7e-28 | 224 | 475 | 16 | 275 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
| PDB | 3msg_B | 5e-27 | 219 | 444 | 13 | 245 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
| PDB | 3msg_A | 5e-27 | 219 | 444 | 13 | 245 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
| PDB | 3msd_B | 5e-27 | 219 | 444 | 13 | 245 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
