| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os03g14010.3 |
| Family | GH10 |
| Protein Properties | Length: 471 Molecular Weight: 52560.4 Isoelectric Point: 5.9673 |
| Chromosome | Chromosome/Scaffold: 3 Start: 7599686 End: 7603064 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH10 | 124 | 384 | 0 |
| QTAKDFPFGSAIASTILGNQAYQKWFVDRFNAAVFEDELKWYSTEPMSGQLRFDVPDQMLAFVRSHRVMVRGHNIFWENQDATPSWVKGLSPDDLRAAVN GRIQNLMTRYRGEFAHWDVNNEMLHYNFYEQRLGANASVEFFSVAQDADPLATLFMNEFNVIETCDDVSSTVDTYVAKLKDLRAGGAVLEGIGLEGHFLK PNIPLMRAVLDKLATLGLPIWFTEIDISNRYDAQTQAVYLEQVLREAYSHPAVTGVMLWTA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 471 Download |
| MYTFSSWVKL EGASSALITA RLALDNAGAR CIGTVLARND CWAFLKGGFV LDWPTQTSVI 60 FFQNADKTPM KITVASGSLQ PFTSDQWSMH QKDTIRKRRK RMATIHVADQ QGGRVVGASV 120 SVRQTAKDFP FGSAIASTIL GNQAYQKWFV DRFNAAVFED ELKWYSTEPM SGQLRFDVPD 180 QMLAFVRSHR VMVRGHNIFW ENQDATPSWV KGLSPDDLRA AVNGRIQNLM TRYRGEFAHW 240 DVNNEMLHYN FYEQRLGANA SVEFFSVAQD ADPLATLFMN EFNVIETCDD VSSTVDTYVA 300 KLKDLRAGGA VLEGIGLEGH FLKPNIPLMR AVLDKLATLG LPIWFTEIDI SNRYDAQTQA 360 VYLEQVLREA YSHPAVTGVM LWTALHPNGC YQMCLTDWNL NNLPVGDVVD RLLQEWQTGQ 420 AAGPTDAHGA YSFSGFLGEY IVSVTYANST SQATFSLSPG DETRHINIQI * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 5.0e-37 | 126 | 382 | 279 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 9.0e-60 | 126 | 382 | 273 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 5.0e-76 | 162 | 409 | 269 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005488 | binding |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF94920.1 | 0 | 1 | 470 | 94 | 563 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ABF94921.1 | 0 | 1 | 470 | 89 | 558 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ABF94922.1 | 0 | 1 | 470 | 1 | 470 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEC74851.1 | 0 | 1 | 470 | 248 | 717 | hypothetical protein OsI_10717 [Oryza sativa Indica Group] |
| RefSeq | NP_001140909.1 | 0 | 1 | 470 | 91 | 560 | hypothetical protein LOC100272986 [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 2e-30 | 131 | 382 | 15 | 268 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v6y_A | 3e-28 | 131 | 382 | 16 | 275 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
| PDB | 3msg_B | 2e-27 | 126 | 351 | 13 | 245 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
| PDB | 3msg_A | 2e-27 | 126 | 351 | 13 | 245 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
| PDB | 3msd_B | 2e-27 | 126 | 351 | 13 | 245 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DV530577 | 251 | 144 | 394 | 0 |
| FL929887 | 259 | 69 | 326 | 0 |
| FF353690 | 244 | 228 | 471 | 0 |
| FL694522 | 256 | 12 | 266 | 0 |
| FL769186 | 237 | 188 | 423 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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