| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os03g18520.1 |
| Family | CBM43 |
| Protein Properties | Length: 489 Molecular Weight: 52579.8 Isoelectric Point: 7.0173 |
| Chromosome | Chromosome/Scaffold: 3 Start: 10376685 End: 10379534 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 375 | 454 | 8.4e-24 |
| WCVLDNNKDISNVSSSFSAACSNADCTALSPGGSCSGIGWPGNVSYAFNNFYQQHDQSEEGCSFNGLGLITTVDPSVDNC | |||
| GH17 | 35 | 354 | 0 |
| VGVNWGFSSSHPLPAAQVVRGLLLPNSVPRVRLAAASPDALAALSGTGVAVTVGVPNELLRPLATSRKAAAAWVHDNVTRYASGVRFEYVAVGDESFLLN HGQQNQSFLVSAAANIQRALVDAKLSNKMKVVVPCSSDVYLNTSALPSKAYFRPEVNETIAELLSFLANHSSPFMVELNPFSSFQHKKNLSLDYYLFQLM SHPVSDGHIKYDNYFDASIDALVTSLTKAGFSNMDIIVGRVGWPSDGAVNATPAIAQSFMTGLVNHLARKSGTPLRPKVPPIETYLFSLLDEDQRSIASG SYERHHGIFTFDGQAKYYVN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 489 Download |
| MRPSRRRHPL PPLAPGLLLI LLLHALAPPP AAAAVGVNWG FSSSHPLPAA QVVRGLLLPN 60 SVPRVRLAAA SPDALAALSG TGVAVTVGVP NELLRPLATS RKAAAAWVHD NVTRYASGVR 120 FEYVAVGDES FLLNHGQQNQ SFLVSAAANI QRALVDAKLS NKMKVVVPCS SDVYLNTSAL 180 PSKAYFRPEV NETIAELLSF LANHSSPFMV ELNPFSSFQH KKNLSLDYYL FQLMSHPVSD 240 GHIKYDNYFD ASIDALVTSL TKAGFSNMDI IVGRVGWPSD GAVNATPAIA QSFMTGLVNH 300 LARKSGTPLR PKVPPIETYL FSLLDEDQRS IASGSYERHH GIFTFDGQAK YYVNLGQGSK 360 ALENAPDVQY LPSKWCVLDN NKDISNVSSS FSAACSNADC TALSPGGSCS GIGWPGNVSY 420 AFNNFYQQHD QSEEGCSFNG LGLITTVDPS VDNCMFNLAI DTSTAASFHP ILAMLQILVL 480 FFCTYNLL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.0001 | 266 | 346 | 85 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 3.0e-8 | 374 | 442 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-21 | 374 | 456 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-61 | 35 | 354 | 323 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005488 | binding |
| GO:0005886 | plasma membrane |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF95444.1 | 0 | 1 | 488 | 1 | 488 | Glycosyl hydrolases family 17 protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ACF78459.1 | 0 | 35 | 483 | 32 | 480 | unknown [Zea mays] |
| GenBank | EEC75046.1 | 0 | 1 | 488 | 1 | 488 | hypothetical protein OsI_11151 [Oryza sativa Indica Group] |
| RefSeq | NP_001049830.1 | 0 | 1 | 488 | 1 | 486 | Os03g0296500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001130286.1 | 0 | 35 | 483 | 32 | 480 | hypothetical protein LOC100191380 [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3f55_D | 0 | 35 | 355 | 2 | 315 | A Chain A, Crystal Structure Of The Third Repeat Domain Of Reelin |
| PDB | 3f55_C | 0 | 35 | 355 | 2 | 315 | A Chain A, Crystal Structure Of The Third Repeat Domain Of Reelin |
| PDB | 3f55_B | 0 | 35 | 355 | 2 | 315 | A Chain A, Crystal Structure Of The Third Repeat Domain Of Reelin |
| PDB | 3f55_A | 0 | 35 | 355 | 2 | 315 | A Chain A, Crystal Structure Of The Third Repeat Domain Of Reelin |
| PDB | 3em5_D | 0 | 35 | 355 | 2 | 315 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
