| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os03g19610.1 |
| Family | CE8 |
| Protein Properties | Length: 346 Molecular Weight: 37994.2 Isoelectric Point: 9.1557 |
| Chromosome | Chromosome/Scaffold: 3 Start: 11033522 End: 11035542 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 59 | 335 | 0 |
| DEFKTVQSAIDAVPVGNTEWVIVHLRSGIYREKVMIPETKPFIFVRGNGKGRTSINHESASSHNAESAAFTVHADNVIVFGLSIRNSARAGLPNVPEVRT VAAMVGGDKIAFYHCAFYSPHHTLFDVAGRHYYESCYIQGNIDFIFGGGQSIFQCPEIFVKPDRRTEIKGSITAQNRKQEDGSGFVFIKGKVYGVGQVYL GRANEAYSRVIFADTYLSKTINPAGWTSYGYTGSTDHVMLGEFNCTGPGSEATKREPWSRQLTQEEADKFINIDFIN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 346 Download |
| MARPRLLLLP LLAVAAAVLS SPLGRALAKT AKKSNDIVNG PLLTSKINAK RTLIVGPEDE 60 FKTVQSAIDA VPVGNTEWVI VHLRSGIYRE KVMIPETKPF IFVRGNGKGR TSINHESASS 120 HNAESAAFTV HADNVIVFGL SIRNSARAGL PNVPEVRTVA AMVGGDKIAF YHCAFYSPHH 180 TLFDVAGRHY YESCYIQGNI DFIFGGGQSI FQCPEIFVKP DRRTEIKGSI TAQNRKQEDG 240 SGFVFIKGKV YGVGQVYLGR ANEAYSRVIF ADTYLSKTIN PAGWTSYGYT GSTDHVMLGE 300 FNCTGPGSEA TKREPWSRQL TQEEADKFIN IDFINGKEWL PAYYY* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02176 | PLN02176 | 2.0e-69 | 51 | 340 | 299 | + putative pectinesterase | ||
| PLN02432 | PLN02432 | 2.0e-71 | 60 | 340 | 283 | + putative pectinesterase | ||
| PLN02682 | PLN02682 | 1.0e-73 | 41 | 341 | 311 | + pectinesterase family protein | ||
| PLN02497 | PLN02497 | 7.0e-84 | 61 | 340 | 286 | + probable pectinesterase | ||
| PLN02480 | PLN02480 | 0 | 28 | 344 | 319 | + Probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0008150 | biological_process |
| GO:0008152 | metabolic process |
| GO:0016787 | hydrolase activity |
| GO:0030599 | pectinesterase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAZ26679.1 | 0 | 1 | 284 | 1 | 284 | hypothetical protein OsJ_10583 [Oryza sativa Japonica Group] |
| RefSeq | NP_001049912.1 | 0 | 1 | 345 | 1 | 345 | Os03g0309400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001146436.1 | 0 | 35 | 345 | 36 | 346 | hypothetical protein LOC100280019 [Zea mays] |
| RefSeq | XP_002311381.1 | 0 | 37 | 343 | 33 | 341 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002457946.1 | 0 | 35 | 345 | 36 | 346 | hypothetical protein SORBIDRAFT_03g022950 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 4e-31 | 60 | 342 | 18 | 310 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2e-24 | 60 | 340 | 14 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 0.00000000001 | 61 | 341 | 18 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 0.00000000001 | 61 | 341 | 18 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 0.00000000001 | 61 | 341 | 18 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
