y
Basic Information | |
---|---|
Species | Oryza sativa |
Cazyme ID | LOC_Os03g45390.1 |
Family | CBM43 |
Protein Properties | Length: 493 Molecular Weight: 52415 Isoelectric Point: 4.4723 |
Chromosome | Chromosome/Scaffold: 3 Start: 25624207 End: 25627079 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CBM43 | 371 | 454 | 2e-24 |
WCVLNPSATPDAMSRVGDNVNYACTYADCTSLGYGSTCNGMDAAGNASYAFNAYFQVQNQVEESCGFQGLAVQTQQDPSTNACN | |||
GH17 | 27 | 348 | 0 |
LGVNWGTMASHPLPPRAVVRMLQDNGISKVKLFDADAGTMEALAGSGVEVMVAIPNNLLDLLTDYDAARDWVHENVSRYSFDGGVNIKYVAVGNEPFLSS LNGTFLNVTFPALQNIQRALYDAGHGDTIKATVPLNADVYNSPENMQVPSAGRFRPDIAGLMTEIVQFLNQSGAPFTVNIYPFLSLYGNDNFPLDYAFFD GTTSPVVDTNGIQYTNVFDANFDTLVSALVAAGVGGLPVVVGEVGWPTDGDKHARADLAQRFYAGLLRKLASNAGTPLRPNQYVEVYLFSLVDEDAKSVA PGNFERHWGILRYDGQPKYSMD |
Full Sequence |
---|
Protein Sequence Length: 493 Download |
MASRSGDRRL AVVAFAAAVL LSAAEGLGVN WGTMASHPLP PRAVVRMLQD NGISKVKLFD 60 ADAGTMEALA GSGVEVMVAI PNNLLDLLTD YDAARDWVHE NVSRYSFDGG VNIKYVAVGN 120 EPFLSSLNGT FLNVTFPALQ NIQRALYDAG HGDTIKATVP LNADVYNSPE NMQVPSAGRF 180 RPDIAGLMTE IVQFLNQSGA PFTVNIYPFL SLYGNDNFPL DYAFFDGTTS PVVDTNGIQY 240 TNVFDANFDT LVSALVAAGV GGLPVVVGEV GWPTDGDKHA RADLAQRFYA GLLRKLASNA 300 GTPLRPNQYV EVYLFSLVDE DAKSVAPGNF ERHWGILRYD GQPKYSMDLA GQGRDTALVA 360 ARGVAYLPRA WCVLNPSATP DAMSRVGDNV NYACTYADCT SLGYGSTCNG MDAAGNASYA 420 FNAYFQVQNQ VEESCGFQGL AVQTQQDPST NACNFTIQIE PSAAAGRRPA AVAVTVATAM 480 LISVLAAMVT TP* 540 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 2.0e-17 | 371 | 442 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 9.0e-30 | 371 | 455 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 3.0e-60 | 27 | 348 | 324 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0003824 | catalytic activity |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005488 | binding |
GO:0005575 | cellular_component |
GO:0005886 | plasma membrane |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAT42176.1 | 0 | 30 | 468 | 37 | 472 | putative 3-glucanase [Zea mays] |
RefSeq | NP_001050810.1 | 0 | 1 | 468 | 1 | 468 | Os03g0656800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001147672.1 | 0 | 30 | 462 | 37 | 466 | glucan endo-1,3-beta-glucosidase 5 [Zea mays] |
RefSeq | XP_002459388.1 | 0 | 24 | 465 | 26 | 465 | hypothetical protein SORBIDRAFT_02g003910 [Sorghum bicolor] |
RefSeq | XP_002466725.1 | 0 | 32 | 464 | 36 | 468 | hypothetical protein SORBIDRAFT_01g012900 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3f55_D | 0 | 27 | 350 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 0 | 27 | 350 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_B | 0 | 27 | 350 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_A | 0 | 27 | 350 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3em5_D | 0 | 27 | 350 | 2 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |