| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os03g56130.1 |
| Family | GH17 |
| Protein Properties | Length: 405 Molecular Weight: 43897.7 Isoelectric Point: 11.3895 |
| Chromosome | Chromosome/Scaffold: 3 Start: 31976170 End: 31980853 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH17 | 195 | 367 | 2.59997e-41 |
| AAGVVEFLRRLSTKEVRVRSSLAALGGTGIRVVGGAPNYDLPALAHGGTAATAAWIQAYPMMLFRFVIVGNEVAGADTQLLVPAMENVHAALAVAGLGHI KVTTSISQATIGIHIPPSASEFTDEAKSSFLSYVIPFLEWTHAPLLANLYPYFIYSYNPGGMDISFALFTASE | |||
| Full Sequence |
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| Protein Sequence Length: 405 Download |
| MASSSSHRWR KGFYPRKDGF SNNGNTTNHI FGVELDTIVS SKFLDPNDNH VSIDINSLKS 60 IAVHTTGYYD DKTGAFHDLS LISGKAMQGV WTGRRPTDGE AGGARRERRR SGCRRRLALW 120 RLLRPRAQRR EAVPFRDQAR NTAALPRPLD VDAGVEAVPE LLRAHRRGPR RRRGERGYAG 180 WWGPSTSSRP SGLRAAGVVE FLRRLSTKEV RVRSSLAALG GTGIRVVGGA PNYDLPALAH 240 GGTAATAAWI QAYPMMLFRF VIVGNEVAGA DTQLLVPAME NVHAALAVAG LGHIKVTTSI 300 SQATIGIHIP PSASEFTDEA KSSFLSYVIP FLEWTHAPLL ANLYPYFIYS YNPGGMDISF 360 ALFTASERAA AGGGGVRARG GRRSGVERRR ARSGWPQAGE RAAG* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd01951 | lectin_L-type | 0.001 | 28 | 82 | 61 | + legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely. | ||
| pfam00139 | Lectin_legB | 5.0e-16 | 21 | 91 | 71 | + Legume lectin domain. | ||
| cd06899 | lectin_legume_LecRK_Arcelin_ConA | 4.0e-18 | 21 | 91 | 71 | + legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor. This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by binding glycans on the cell surface. Medically, PHA is used as a mitogen to trigger cell division in T-lymphocytes and to activate latent HIV-1 from human peripheral lymphocytes. Plant L-type lectins are primarily found in the seeds of leguminous plants where they constitute about 10% of the total soluble protein of the seed extracts. They are synthesized during seed development several weeks after flowering and transported to the vacuole where they become condensed into specialized vesicles called protein bodies. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely. | ||
| pfam00332 | Glyco_hydro_17 | 2.0e-34 | 198 | 364 | 178 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005488 | binding |
| GO:0005618 | cell wall |
| GO:0005773 | vacuole |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAP68878.1 | 0 | 89 | 404 | 1 | 316 | putative lichenase, 5'-partial [Oryza sativa Japonica Group] |
| GenBank | AAT85038.1 | 0 | 1 | 404 | 1 | 404 | putative Glycosyl hydrolases family 17 protein [Oryza sativa Japonica Group] |
| DDBJ | BAC20025.1 | 0 | 75 | 370 | 33 | 318 | putative glucanase [Oryza sativa Japonica Group] |
| GenBank | EEE67537.1 | 0 | 211 | 370 | 5 | 158 | hypothetical protein OsJ_25015 [Oryza sativa Japonica Group] |
| RefSeq | NP_001051408.1 | 0 | 255 | 404 | 1 | 150 | Os03g0772000 [Oryza sativa (japonica cultivar-group)] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghr_A | 0 | 182 | 403 | 5 | 243 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 1aq0_B | 0 | 182 | 403 | 5 | 243 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 0 | 182 | 403 | 5 | 243 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3f55_D | 8e-28 | 198 | 403 | 19 | 251 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3f55_C | 8e-28 | 198 | 403 | 19 | 251 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CB647802 | 178 | 195 | 364 | 0 |
| CB676355 | 178 | 195 | 364 | 9.80909e-45 |
| CB654759 | 178 | 195 | 364 | 6.02558e-44 |
| CB654550 | 178 | 195 | 364 | 7.00649e-44 |
| CB654032 | 178 | 195 | 364 | 7.9874e-44 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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