| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os03g59330.1 |
| Family | GH28 |
| Protein Properties | Length: 445 Molecular Weight: 46152.8 Isoelectric Point: 6.1702 |
| Chromosome | Chromosome/Scaffold: 3 Start: 33777510 End: 33781305 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 92 | 428 | 0 |
| WSAACASAAPAVVLVPESRSYLLRQVTLSGPCESTIKLMVKGTLVASPDMSNWNESNRRYWIVVRGVDGLAVGGGGTIDGNGEGWWENSCKINRALPCKG APTALSFHTCDNLSVNGLKMVNSQQIHMSVEDCTGVELAHLSISAPGTSPNTDGIHITHSKNVQVSDCTIKTGDDCVSIEDGTHGLHVTRLVCGPGHGIS IGSLGDDNSRAEVSDIFIDTVHLYGTTNGARIKTWQGGSGYAKDIVFQNMVMNSVKNPIIIDQNYCDSAKKCETQEGSAVEISNVVFKNIAGTTISKSAI TLNCSKNYPCYDISLQDINLEMVDDNGATGSTCQNAK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 445 Download |
| MASVRALLAL TFLLSGGAAT AAAAMVRNGG SPSIYGGGGG EGAAVIGRGG RSLLQAAAAA 60 AATTQSAVFS LDSYGAHGDG ERDDTAALAR AWSAACASAA PAVVLVPESR SYLLRQVTLS 120 GPCESTIKLM VKGTLVASPD MSNWNESNRR YWIVVRGVDG LAVGGGGTID GNGEGWWENS 180 CKINRALPCK GAPTALSFHT CDNLSVNGLK MVNSQQIHMS VEDCTGVELA HLSISAPGTS 240 PNTDGIHITH SKNVQVSDCT IKTGDDCVSI EDGTHGLHVT RLVCGPGHGI SIGSLGDDNS 300 RAEVSDIFID TVHLYGTTNG ARIKTWQGGS GYAKDIVFQN MVMNSVKNPI IIDQNYCDSA 360 KKCETQEGSA VEISNVVFKN IAGTTISKSA ITLNCSKNYP CYDISLQDIN LEMVDDNGAT 420 GSTCQNAKWR KSGTVVPQPC TSTN* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-82 | 74 | 444 | 373 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-90 | 69 | 441 | 376 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-92 | 103 | 428 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 3.0e-114 | 68 | 444 | 377 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-114 | 70 | 438 | 369 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000003 | reproduction |
| GO:0004650 | polygalacturonase activity |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC76383.1 | 0 | 25 | 444 | 1 | 420 | hypothetical protein OsI_13998 [Oryza sativa Indica Group] |
| RefSeq | NP_001051647.1 | 0 | 1 | 444 | 1 | 444 | Os03g0808000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002463688.1 | 0 | 65 | 443 | 58 | 435 | hypothetical protein SORBIDRAFT_01g004230 [Sorghum bicolor] |
| RefSeq | XP_002466241.1 | 0 | 41 | 442 | 33 | 433 | hypothetical protein SORBIDRAFT_01g004190 [Sorghum bicolor] |
| RefSeq | XP_002466242.1 | 0 | 68 | 444 | 74 | 452 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-26 | 163 | 411 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 1e-19 | 153 | 427 | 67 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 1e-19 | 153 | 427 | 67 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 1e-19 | 153 | 427 | 67 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1rmg_A | 5e-18 | 73 | 411 | 25 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
