| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os03g61800.2 |
| Family | GH28 |
| Protein Properties | Length: 477 Molecular Weight: 51605.3 Isoelectric Point: 6.0395 |
| Chromosome | Chromosome/Scaffold: 3 Start: 35037354 End: 35041627 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 73 | 408 | 0 |
| ADKGGAQLFVPAGRWLTGSFSLISHLTLSLDKDAEIIGSPDSSDWPVIDPLPSYGRGRELPGKRHQSLIFGTNLTDVIITGANGTIDGQGAIWWDWFHSN TLNYTRPHLVELMYSTDVVISNLTFKNSPFWNIHPVYCSQVLVQHVTILAPLNSPNTDGIDPDSSTNVCIDHCYVRNGDDVIVIKSGWDEYGISFARPST NISISNITGETRGGAGIAFGSEMSGGISEVRAEGLRIVNSMHGIRIKTAPGRGGYVKNVYISDVSMDNVSMAIRITGNFGEHPDDKYDRNALPMISNITI ENVVGVNVGVAGILEGIEGDNFSSICLSNVSLSVQS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 477 Download |
| MRRSASLLRV LLVFITMVGT QWSNVSSTYC KDMASSVYRP HSVTITEFGA VGDGVTLNTK 60 AFQNAIFYLN SFADKGGAQL FVPAGRWLTG SFSLISHLTL SLDKDAEIIG SPDSSDWPVI 120 DPLPSYGRGR ELPGKRHQSL IFGTNLTDVI ITGANGTIDG QGAIWWDWFH SNTLNYTRPH 180 LVELMYSTDV VISNLTFKNS PFWNIHPVYC SQVLVQHVTI LAPLNSPNTD GIDPDSSTNV 240 CIDHCYVRNG DDVIVIKSGW DEYGISFARP STNISISNIT GETRGGAGIA FGSEMSGGIS 300 EVRAEGLRIV NSMHGIRIKT APGRGGYVKN VYISDVSMDN VSMAIRITGN FGEHPDDKYD 360 RNALPMISNI TIENVVGVNV GVAGILEGIE GDNFSSICLS NVSLSVQSMH PWNCSLIEGY 420 SNSVIPESCE QLRTDCGQTP ICYDGGSSSA IHAQAARHRL SSASRLLNPL LKLAML* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-24 | 35 | 351 | 335 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-25 | 34 | 347 | 329 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 3.0e-29 | 41 | 363 | 334 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-34 | 141 | 347 | 212 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 8.0e-54 | 16 | 341 | 356 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005773 | vacuole |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008150 | biological_process |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF99735.1 | 0 | 17 | 476 | 1 | 460 | glycoside hydrolase family 28 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ACN28107.1 | 0 | 1 | 468 | 1 | 467 | unknown [Zea mays] |
| RefSeq | NP_001051812.1 | 0 | 1 | 476 | 1 | 476 | Os03g0833800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151479.1 | 0 | 1 | 468 | 1 | 467 | polygalacturonase [Zea mays] |
| RefSeq | XP_002463589.1 | 0 | 17 | 474 | 1 | 457 | hypothetical protein SORBIDRAFT_01g002550 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 9.99995e-41 | 41 | 427 | 26 | 420 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 9.99995e-41 | 41 | 427 | 26 | 420 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 9.99995e-41 | 41 | 427 | 26 | 420 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 9.99995e-41 | 41 | 427 | 26 | 420 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 5e-20 | 87 | 408 | 52 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
