| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os03g61800.3 |
| Family | GH28 |
| Protein Properties | Length: 461 Molecular Weight: 49748 Isoelectric Point: 5.5176 |
| Chromosome | Chromosome/Scaffold: 3 Start: 35037981 End: 35041627 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 57 | 392 | 0 |
| ADKGGAQLFVPAGRWLTGSFSLISHLTLSLDKDAEIIGSPDSSDWPVIDPLPSYGRGRELPGKRHQSLIFGTNLTDVIITGANGTIDGQGAIWWDWFHSN TLNYTRPHLVELMYSTDVVISNLTFKNSPFWNIHPVYCSQVLVQHVTILAPLNSPNTDGIDPDSSTNVCIDHCYVRNGDDVIVIKSGWDEYGISFARPST NISISNITGETRGGAGIAFGSEMSGGISEVRAEGLRIVNSMHGIRIKTAPGRGGYVKNVYISDVSMDNVSMAIRITGNFGEHPDDKYDRNALPMISNITI ENVVGVNVGVAGILEGIEGDNFSSICLSNVSLSVQS | |||
| Full Sequence |
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| Protein Sequence Length: 461 Download |
| MVGTQWSNVS STYCKDMASS VYRPHSVTIT EFGAVGDGVT LNTKAFQNAI FYLNSFADKG 60 GAQLFVPAGR WLTGSFSLIS HLTLSLDKDA EIIGSPDSSD WPVIDPLPSY GRGRELPGKR 120 HQSLIFGTNL TDVIITGANG TIDGQGAIWW DWFHSNTLNY TRPHLVELMY STDVVISNLT 180 FKNSPFWNIH PVYCSQVLVQ HVTILAPLNS PNTDGIDPDS STNVCIDHCY VRNGDDVIVI 240 KSGWDEYGIS FARPSTNISI SNITGETRGG AGIAFGSEMS GGISEVRAEG LRIVNSMHGI 300 RIKTAPGRGG YVKNVYISDV SMDNVSMAIR ITGNFGEHPD DKYDRNALPM ISNITIENVV 360 GVNVGVAGIL EGIEGDNFSS ICLSNVSLSV QSMHPWNCSL IEGYSNSVIP ESCEQLRTDC 420 GQTPICYDGG SSSAIHAQAA RHRLSSASRL LNPLLKLAML * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-24 | 19 | 335 | 335 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-25 | 18 | 331 | 329 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-29 | 25 | 347 | 334 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-34 | 125 | 331 | 212 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 8.0e-54 | 2 | 325 | 354 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005773 | vacuole |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008150 | biological_process |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF99735.1 | 0 | 1 | 460 | 1 | 460 | glycoside hydrolase family 28 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ACN28107.1 | 0 | 1 | 452 | 17 | 467 | unknown [Zea mays] |
| RefSeq | NP_001051812.1 | 0 | 1 | 460 | 17 | 476 | Os03g0833800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151479.1 | 0 | 1 | 452 | 17 | 467 | polygalacturonase [Zea mays] |
| RefSeq | XP_002463589.1 | 0 | 1 | 458 | 1 | 457 | hypothetical protein SORBIDRAFT_01g002550 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 9.99995e-41 | 25 | 411 | 26 | 420 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 9.99995e-41 | 25 | 411 | 26 | 420 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 9.99995e-41 | 25 | 411 | 26 | 420 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 9.99995e-41 | 25 | 411 | 26 | 420 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 5e-20 | 71 | 392 | 52 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO869614 | 319 | 5 | 323 | 0 |
| GO865721 | 300 | 46 | 345 | 0 |
| EB668408 | 277 | 93 | 369 | 0 |
| GO869571 | 301 | 1 | 300 | 0 |
| BM817163 | 277 | 59 | 335 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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