Basic Information | |
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Species | Oryza sativa |
Cazyme ID | LOC_Os04g05050.1 |
Family | PL1 |
Protein Properties | Length: 474 Molecular Weight: 50581.9 Isoelectric Point: 7.9248 |
Chromosome | Chromosome/Scaffold: 4 Start: 2480533 End: 2485914 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 190 | 392 | 0 |
EPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIANGACITIQYVTNVIIHGLHIHDCRPTGNAMVRSSPSHYGWRTMADGDAVSIFGASHIWVDHCS LSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYVKDKAMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNR YLA |
Full Sequence |
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Protein Sequence Length: 474 Download |
MAEAAARRWA AALVLLVLLT GTVELIGGGG GSGGRRLLAG LRAGSTAAAS GTRRWLRDSS 60 WPATAAAAAA ASRGDDGDGD EASSAAMTVP GAVDDPEEVV SQVHMSIRNS TARRKLGYLS 120 CGTGNPIDDC WRCDPDWHKN RQRLADCGIG FGRNAIGGRD GKIYVVTDPS DDDAVNPKKG 180 TLRYAVIRDE PLWIVFKRDM VITLKQELIM NSFKTIDGRG ANVHIANGAC ITIQYVTNVI 240 IHGLHIHDCR PTGNAMVRSS PSHYGWRTMA DGDAVSIFGA SHIWVDHCSL SNCADGLIDA 300 IMGSTAITVS NNYFTHHNEV MLLGHSDSYV KDKAMQVTIA FNHFGEGLIQ RMPRCRHGYF 360 HVVNNDYTHW EMYAIGGSAE PTINSQGNRY LAPTNPFAKE VTKRVETAQT IWKGWNWRSE 420 GDLLLNGAFF TPSGAGASAS YSRASSLGAK SSSMVGTITS GAGALSCRGG SAC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 5.0e-27 | 212 | 405 | 208 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 8.0e-72 | 205 | 390 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-81 | 199 | 393 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0003824 | catalytic activity |
GO:0005623 | cell |
GO:0008150 | biological_process |
GO:0008152 | metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAE02420.2 | 0 | 20 | 473 | 20 | 472 | OSJNBa0095E20.8 [Oryza sativa (japonica cultivar-group)] |
GenBank | EEC76710.1 | 0 | 1 | 473 | 1 | 473 | hypothetical protein OsI_14719 [Oryza sativa Indica Group] |
GenBank | EEE60442.1 | 0 | 20 | 473 | 20 | 443 | hypothetical protein OsJ_13660 [Oryza sativa Japonica Group] |
RefSeq | NP_001052103.1 | 0 | 1 | 459 | 1 | 459 | Os04g0137100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001147553.1 | 0 | 36 | 473 | 44 | 467 | pectate lyase 8 [Zea mays] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 125 | 466 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 125 | 466 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-17 | 194 | 391 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.000000000000008 | 215 | 464 | 90 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.000000000000008 | 215 | 464 | 90 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |