| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os04g05050.2 |
| Family | PL1 |
| Protein Properties | Length: 381 Molecular Weight: 41785.3 Isoelectric Point: 8.2211 |
| Chromosome | Chromosome/Scaffold: 4 Start: 2483098 End: 2485914 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 97 | 299 | 0 |
| EPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIANGACITIQYVTNVIIHGLHIHDCRPTGNAMVRSSPSHYGWRTMADGDAVSIFGASHIWVDHCS LSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYVKDKAMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNR YLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 381 Download |
| MEFFLTMEFI IRSIRNSTAR RKLGYLSCGT GNPIDDCWRC DPDWHKNRQR LADCGIGFGR 60 NAIGGRDGKI YVVTDPSDDD AVNPKKGTLR YAVIRDEPLW IVFKRDMVIT LKQELIMNSF 120 KTIDGRGANV HIANGACITI QYVTNVIIHG LHIHDCRPTG NAMVRSSPSH YGWRTMADGD 180 AVSIFGASHI WVDHCSLSNC ADGLIDAIMG STAITVSNNY FTHHNEVMLL GHSDSYVKDK 240 AMQVTIAFNH FGEGLIQRMP RCRHGYFHVV NNDYTHWEMY AIGGSAEPTI NSQGNRYLAP 300 TNPFAKEVTK RVETAQTIWK GWNWRSEGDL LLNGAFFTPS GAGASASYSR ASSLGAKSSS 360 MVGTITSGAG ALSCRGGSAC * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 3.0e-27 | 119 | 312 | 208 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-72 | 112 | 297 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 7.0e-82 | 106 | 300 | 206 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0005623 | cell |
| GO:0008150 | biological_process |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAE02420.2 | 0 | 13 | 380 | 105 | 472 | OSJNBa0095E20.8 [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEC76710.1 | 0 | 13 | 380 | 106 | 473 | hypothetical protein OsI_14719 [Oryza sativa Indica Group] |
| GenBank | EEE60442.1 | 0 | 13 | 380 | 76 | 443 | hypothetical protein OsJ_13660 [Oryza sativa Japonica Group] |
| RefSeq | NP_001052103.1 | 0 | 13 | 365 | 106 | 458 | Os04g0137100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001147553.1 | 0 | 13 | 380 | 113 | 467 | pectate lyase 8 [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 32 | 373 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 32 | 373 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 4e-17 | 101 | 298 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_B | 0.00000000000001 | 122 | 371 | 90 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_A | 0.00000000000001 | 122 | 371 | 90 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778688 | 369 | 13 | 381 | 0 |
| FG606120 | 333 | 8 | 338 | 0 |
| CK262438 | 297 | 43 | 339 | 0 |
| HO772321 | 294 | 22 | 315 | 0 |
| EL457552 | 293 | 22 | 314 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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