| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os04g44230.1 |
| Family | AA7 |
| Protein Properties | Length: 533 Molecular Weight: 57618.6 Isoelectric Point: 6.3954 |
| Chromosome | Chromosome/Scaffold: 4 Start: 26199152 End: 26203656 |
| Description | cytokinin oxidase/dehydrogenase 6 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 51 | 252 | 3.4e-27 |
| VSDAPFAVMRPESPDDIALLLGALSSTAPSPRATVAAVGAGHSLHGQAQARDGIVVETRALPRDVHVVSARAHGGDDDATVRAYADVGAGALWVEVLEEC LKLGLAPPSWTDYLYLTVGGTLSNGGISGQTFKHGPQISNVLQLEVVTGKGEVVTCSPTEIPELFFAVLGGLGQFGIITRARIPLQLAPPKVRWVRAFYD SF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 533 Download |
| MELKAMYLYA AVLAVLLCSS VNFIQSPTDV LGPVALLEPT PSSARDFGAV VSDAPFAVMR 60 PESPDDIALL LGALSSTAPS PRATVAAVGA GHSLHGQAQA RDGIVVETRA LPRDVHVVSA 120 RAHGGDDDAT VRAYADVGAG ALWVEVLEEC LKLGLAPPSW TDYLYLTVGG TLSNGGISGQ 180 TFKHGPQISN VLQLEVVTGK GEVVTCSPTE IPELFFAVLG GLGQFGIITR ARIPLQLAPP 240 KVRWVRAFYD SFETFTGDQE LLVSMPEQVD YVEGFMVLNE QSLHSSSVAF PAQLNFSPDF 300 GSKGRKKVYY CIEFAVHDFQ QDSSRADHVV KLVSAKLSYL RPHVYSVEVS YFDFLNRVRM 360 EEESLRSRGL WDVPHPWLNV FVPKHGITQF KGLLMDTVSA DDFEGPILVY PLLTDKWDGN 420 TSAVVPAAPD GVMYIFGVLR STDPARCGRA CVDSIMARHR RVADEACRDG GGGGRGIGAK 480 QYLARQPSPA RWRDHFGAGW GRFAARKARF DPLHVLGPGQ GIFPRTDSAG SM* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR01678 | FAD_lactone_ox | 2.0e-8 | 44 | 233 | 190 | + sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1. | ||
| pfam01565 | FAD_binding_4 | 4.0e-25 | 55 | 207 | 154 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| COG0277 | GlcD | 2.0e-28 | 50 | 522 | 484 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam09265 | Cytokin-bind | 1.0e-130 | 239 | 523 | 291 | + Cytokinin dehydrogenase 1, FAD and cytokinin binding. Members of this family adopt an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. They are predominantly found in plant cytokinin dehydrogenase 1, where they are capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin. | ||
| PLN02441 | PLN02441 | 0 | 18 | 529 | 527 | + cytokinin dehydrogenase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008152 | metabolic process |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0009056 | catabolic process |
| GO:0009653 | anatomical structure morphogenesis |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAE05712.2 | 0 | 1 | 532 | 1 | 532 | OSJNBb0065J09.8 [Oryza sativa (japonica cultivar-group)] |
| GenBank | EAY82296.1 | 0 | 16 | 531 | 5 | 520 | hypothetical protein OsI_37507 [Oryza sativa Indica Group] |
| RefSeq | NP_001064886.1 | 0 | 16 | 531 | 5 | 520 | Os10g0483500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002446804.1 | 0 | 1 | 531 | 1 | 528 | hypothetical protein SORBIDRAFT_06g022930 [Sorghum bicolor] |
| RefSeq | XP_002467062.1 | 0 | 18 | 531 | 20 | 520 | hypothetical protein SORBIDRAFT_01g019000 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2q4w_A | 0 | 43 | 526 | 50 | 523 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 2exr_A | 0 | 43 | 526 | 50 | 523 | A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX) FROM Arabidopsis Thaliana At5g21482 |
| PDB | 3s1c_A | 0 | 40 | 523 | 36 | 515 | A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX) FROM Arabidopsis Thaliana At5g21482 |
| PDB | 3dq0_A | 0 | 40 | 523 | 36 | 515 | A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX) FROM Arabidopsis Thaliana At5g21482 |
| PDB | 3c0p_A | 0 | 40 | 523 | 36 | 515 | A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX) FROM Arabidopsis Thaliana At5g21482 |
