Basic Information | |
---|---|
Species | Oryza sativa |
Cazyme ID | LOC_Os04g46740.1 |
Family | CE8 |
Protein Properties | Length: 354 Molecular Weight: 38958 Isoelectric Point: 8.3734 |
Chromosome | Chromosome/Scaffold: 4 Start: 27706654 End: 27708850 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 53 | 344 | 0 |
IVVDASGGGDFLSIQQAVNSVPENNTVRVIMQINAGSYIEKVVVPATKPYITFQGAGRDVTVVEWHDRASDRGPDGQQLRTYNTASVTVLSNYFTAKNIS FKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDDAGRHYFRDCYIEGSIDFVFGNGRSLYKDCELHSTAQRFGSVAAQGRHDPCERTGFA FVNCRVTGTGRLYVGRAMGQYSRIVYAYTYFDSVIAPGGWDDWDHASNKSMTAFFGMYRNWGPGADAVHGVPWARELDYFAARPFLGKSFVN |
Full Sequence |
---|
Protein Sequence Length: 354 Download |
MVRERVVVVM AFAVATLATS LLPPLACQAA PAPCERPTRG HHQYRQPVGV RRIVVDASGG 60 GDFLSIQQAV NSVPENNTVR VIMQINAGSY IEKVVVPATK PYITFQGAGR DVTVVEWHDR 120 ASDRGPDGQQ LRTYNTASVT VLSNYFTAKN ISFKNTAPAP MPGMQGWQAV AFRISGDKAF 180 FFGCGFYGAQ DTLCDDAGRH YFRDCYIEGS IDFVFGNGRS LYKDCELHST AQRFGSVAAQ 240 GRHDPCERTG FAFVNCRVTG TGRLYVGRAM GQYSRIVYAY TYFDSVIAPG GWDDWDHASN 300 KSMTAFFGMY RNWGPGADAV HGVPWARELD YFAARPFLGK SFVNGFHWLT PDV* 360 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 2.0e-106 | 53 | 351 | 308 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 3.0e-109 | 50 | 351 | 304 | + pectinesterase family protein | ||
PLN02671 | PLN02671 | 4.0e-117 | 49 | 349 | 303 | + pectinesterase | ||
PLN02682 | PLN02682 | 3.0e-141 | 51 | 351 | 302 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 0 | 38 | 351 | 314 | + probable pectinesterase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005618 | cell wall |
GO:0005623 | cell |
GO:0008150 | biological_process |
GO:0008152 | metabolic process |
GO:0016787 | hydrolase activity |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACL53825.1 | 0 | 28 | 353 | 24 | 349 | unknown [Zea mays] |
EMBL | CAD41229.2 | 0 | 10 | 353 | 1 | 344 | OSJNBa0010H02.16 [Oryza sativa (japonica cultivar-group)] |
EMBL | CBI31927.1 | 0 | 12 | 351 | 8 | 346 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002303355.1 | 0 | 38 | 351 | 1 | 314 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002448293.1 | 0 | 20 | 353 | 16 | 350 | hypothetical protein SORBIDRAFT_06g024730 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 53 | 349 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 4e-36 | 54 | 349 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 5e-20 | 53 | 259 | 34 | 253 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 2e-18 | 57 | 229 | 12 | 192 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 2e-18 | 57 | 229 | 12 | 192 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |