| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os04g46740.2 |
| Family | CE8 |
| Protein Properties | Length: 204 Molecular Weight: 22710.4 Isoelectric Point: 7.0812 |
| Chromosome | Chromosome/Scaffold: 4 Start: 27706654 End: 27708847 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 4 | 194 | 0 |
| QNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDDAGRHYFRDCYIEGSIDFVFGNGRSLYKDCELHSTAQRFGSVAAQGRHDPCERTGFAF VNCRVTGTGRLYVGRAMGQYSRIVYAYTYFDSVIAPGGWDDWDHASNKSMTAFFGMYRNWGPGADAVHGVPWARELDYFAARPFLGKSFVN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 204 Download |
| MAWQNTAPAP MPGMQGWQAV AFRISGDKAF FFGCGFYGAQ DTLCDDAGRH YFRDCYIEGS 60 IDFVFGNGRS LYKDCELHST AQRFGSVAAQ GRHDPCERTG FAFVNCRVTG TGRLYVGRAM 120 GQYSRIVYAY TYFDSVIAPG GWDDWDHASN KSMTAFFGMY RNWGPGADAV HGVPWARELD 180 YFAARPFLGK SFVNGFHWLT PDV* 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02304 | PLN02304 | 3.0e-74 | 1 | 201 | 209 | + probable pectinesterase | ||
| PLN02671 | PLN02671 | 2.0e-76 | 4 | 199 | 196 | + pectinesterase | ||
| PLN02665 | PLN02665 | 1.0e-77 | 4 | 201 | 200 | + pectinesterase family protein | ||
| PLN02682 | PLN02682 | 2.0e-93 | 4 | 201 | 198 | + pectinesterase family protein | ||
| PLN02634 | PLN02634 | 1.0e-148 | 1 | 201 | 201 | + probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0005623 | cell |
| GO:0008150 | biological_process |
| GO:0008152 | metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACL53825.1 | 0 | 1 | 203 | 147 | 349 | unknown [Zea mays] |
| EMBL | CAD41229.2 | 0 | 1 | 203 | 142 | 344 | OSJNBa0010H02.16 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001053508.1 | 0 | 1 | 203 | 1 | 203 | Os04g0553500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002303355.1 | 0 | 1 | 201 | 114 | 314 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002448293.1 | 0 | 1 | 203 | 148 | 350 | hypothetical protein SORBIDRAFT_06g024730 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 3e-29 | 1 | 199 | 101 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 4e-27 | 4 | 199 | 100 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 0.000000000008 | 2 | 79 | 113 | 192 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 0.000000000008 | 2 | 79 | 113 | 192 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 0.000000000008 | 2 | 79 | 113 | 192 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| JG296825 | 204 | 1 | 204 | 0 |
| FE657997 | 204 | 1 | 204 | 0 |
| CO445615 | 201 | 4 | 204 | 0 |
| FL691776 | 204 | 1 | 204 | 0 |
| FE657998 | 194 | 11 | 204 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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