| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os04g52640.2 |
| Family | CBM57 |
| Protein Properties | Length: 891 Molecular Weight: 97595.5 Isoelectric Point: 6.7877 |
| Chromosome | Chromosome/Scaffold: 4 Start: 31317589 End: 31328040 |
| Description | Leucine-rich repeat transmembrane protein kinase |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM57 | 281 | 451 | 4.9e-29 |
| FAVDCGSTRFISGSRNSSYQADATNLGAASYHVTEPLTWGISNVGKFMDTPNGTTIINNARQFQATLDSELFQTARMSPSSLRYYGIGLQNGNYTVSLQF AEFGFEDTESWKSRGRRVFDIYVQGERKEKDFDIKKEAGGKSYTAVKKDYIVSVTRNFVEIHLFWAGKGTC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 891 Download |
| MQYMTFGINA LSGSIPKELG NLTNLVSLGF SSNNFSGSLP SELGSLFKLE ELFIDSAGLS 60 GELPSSLSKL TRMKILWASD NNFTGQIPDY IGSWNLTDLR FQGNSFQGPL PANLSNLVQL 120 TNLRIGDIAS GSSSSLAFIS NMTSLNTLIL RNCMVSDSLA LIDFSKFASL TLLDLSFNNI 180 TGQVPQTLLN LNFLSYLFLG NNNLTGSLPS SKIRSLRNLD FSYNQLSGNF PFWVSEEDLQ 240 LNLVANNFMV NISNNSALPS GLECLQQNTP CFLGSPHSAS FAVDCGSTRF ISGSRNSSYQ 300 ADATNLGAAS YHVTEPLTWG ISNVGKFMDT PNGTTIINNA RQFQATLDSE LFQTARMSPS 360 SLRYYGIGLQ NGNYTVSLQF AEFGFEDTES WKSRGRRVFD IYVQGERKEK DFDIKKEAGG 420 KSYTAVKKDY IVSVTRNFVE IHLFWAGKGT CCIPTQGYYG PTISALSLSP NFTPTIGNVA 480 EQNSSTSKTV VIVAVAIGVT ILGLVALVGI FLWRKKRRKL SLEQQELYSI VGRPNIFSYG 540 ELRSATENFS SSNRLGEGGY GAVYKGKLMD GRIVAVKQLS QTSHQGKKQF ATEIETISRV 600 QHRNLVKLYG CCLEGNNPLL VYEYMENGSL DKALFGTEKL HIGWPARFEI CLGIARGLAY 660 LHEESSIRVV HRDIKASNVL LDANLNPKIS DFGLAKLYDD KMTHVSTKVA GTFGYLAPEY 720 AMRGHMTEKV DVFAFGVVLL ETLAGRPNYD DVLEEDKIYI FEWVWRLYES ERALDIVDPN 780 LTEFNSEEVL RAIHVALLCT QGSPHRRPSM SRVVAMLTGD AEVGEVAAKP SYITEWQIKG 840 GGTTTTTTGS SSTSSSAANG QWSSAPPPPR ATSSPKMSSP FLSSVVDEGR * 900 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00069 | Pkinase | 2.0e-52 | 554 | 778 | 239 | + Protein kinase domain. | ||
| cd00192 | PTKc | 5.0e-53 | 553 | 818 | 288 | + Catalytic domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. | ||
| smart00219 | TyrKc | 1.0e-56 | 555 | 817 | 273 | + Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily. | ||
| smart00221 | STYKc | 4.0e-57 | 555 | 817 | 275 | + Protein kinase; unclassified specificity. Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. | ||
| pfam11721 | Malectin | 9.0e-58 | 280 | 466 | 189 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000166 | nucleotide binding |
| GO:0004672 | protein kinase activity |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0005886 | plasma membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAD41886.2 | 0 | 1 | 802 | 150 | 951 | OSJNBa0093O08.5 [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEE61690.1 | 0 | 1 | 890 | 133 | 984 | hypothetical protein OsJ_16163 [Oryza sativa Japonica Group] |
| RefSeq | NP_001053881.1 | 0 | 1 | 802 | 133 | 934 | Os04g0616700 [Oryza sativa (japonica cultivar-group)] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ulz_A | 0 | 531 | 820 | 14 | 309 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 3uim_A | 0 | 531 | 820 | 14 | 309 | A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation |
| PDB | 3tl8_H | 0 | 531 | 820 | 22 | 317 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 3tl8_G | 0 | 531 | 820 | 22 | 317 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 3tl8_D | 0 | 531 | 820 | 22 | 317 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
