| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os04g53310.1 |
| Family | CBM53 |
| Protein Properties | Length: 1217 Molecular Weight: 138205 Isoelectric Point: 5.3423 |
| Chromosome | Chromosome/Scaffold: 4 Start: 31750955 End: 31759581 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM53 | 334 | 417 | 3e-33 |
| SVIDLYLNHSMSALASEPDILIKGAFNGWRWKKFTQKMHKSELTGDWWCCKLHIPKQAYRLDFVFFNGDTIYENNNHNDFVLQI | |||
| CBM53 | 670 | 758 | 3.6e-35 |
| GTTVDVLYNPSNTVLNGKPEVWFRCSFNRWTHPSGPLPPQKMVNAENGSHLRATVRVPLDAYMMDFVFSESEEGGIYDNRNGMDYHSPV | |||
| CBM53 | 508 | 598 | 1.4e-35 |
| GDRVKLFYNRSSRPLMHNTEIWMHGGYNNWSDGLSIAEKLIKSYEKDGDWWYADVTLPEGALVLDWVFADGPPGNARNYDNNGRQDFHAVV | |||
| GT5 | 769 | 1211 | 0 |
| HIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKYDCLNLSNVKDLHYRQSFTWGNTEIKVWFGKVEDVPVYFLEPQNGMFWVGCVYGRNDE SRFGFFCHSALEFLRQNGSSPDIIHCHDWSSAPVAWLFKEQYAQNGLSNGRVVFTIHNLEFGAHHIGKAMARCDKATTVSYTYSREVSGHGAIAPHFSKF HGIRNGIDPDIWDPYSDNFIPVHYTSENVVEGKSAAKKALQQRLGLQQTDTPVVGIISRLTVQKGIHLIKHAIYRTLERNGQVVLLGSAPDHRIQGDFTN LASKLHGEYHGRVKLCLTYDEPLSHLIYAGADFILVPSMFEPCGLTQLTAMRYGSIPIVRKTGGLYDTVFDVDDDKDRAREQGLEPNGFSFEGADSNGVD YALDRAITTWYDARDWFHSLCKRVMEQDWTWNRPALDYMELYH | |||
| Full Sequence |
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| Protein Sequence Length: 1217 Download |
| MEMAHSPLCS RSRPVLVVRP ATAATGFAQP IIRCRRFTRT RLLRCLVASA DYSKRNPRRA 60 STPKPKGAAS RTYAPRPTVE SSMKKIGQSG TDEGDLGTSN GKLSSEATEQ TSNVEESSEV 120 DFSGNVSSSV FLEGMDDAFE AETEEEVEQN QSPELSSESM DDDAIDRKLD EYRGKISALI 180 SSKPEPTSVS STHVQDRSIV GFHEQEKSVV SFHEQDRSIV SVPEQSQPSS GVSGQNPTEE 240 KTIISGQDVT EEAPEEITGK SIEREPLSRE TEKVLFADDD PRIIKDEQYE PDIAPVQDDV 300 DPQVLRRRLE ELAEKNYLAG NKCFVFPEVV QADSVIDLYL NHSMSALASE PDILIKGAFN 360 GWRWKKFTQK MHKSELTGDW WCCKLHIPKQ AYRLDFVFFN GDTIYENNNH NDFVLQIESE 420 INEHSFEDFL VEEKQRELER LAAEEAERKR QAEEERRKEE ERAAMEADRA QAKAEVEMNK 480 NKLQNLLNSA SRYADNLWYI EPHTYKAGDR VKLFYNRSSR PLMHNTEIWM HGGYNNWSDG 540 LSIAEKLIKS YEKDGDWWYA DVTLPEGALV LDWVFADGPP GNARNYDNNG RQDFHAVVPN 600 NISEDLFWVE EEHMIFKRLQ KERKEREDAD RRKSEITAKM KAEMKEKTMR DFLLSQKHIV 660 YTEPLEVRAG TTVDVLYNPS NTVLNGKPEV WFRCSFNRWT HPSGPLPPQK MVNAENGSHL 720 RATVRVPLDA YMMDFVFSES EEGGIYDNRN GMDYHSPVTD SVAKEPPMHI VHIAVEMAPI 780 AKVGGLGDVV TSLSRAVQDL GHNVEVILPK YDCLNLSNVK DLHYRQSFTW GNTEIKVWFG 840 KVEDVPVYFL EPQNGMFWVG CVYGRNDESR FGFFCHSALE FLRQNGSSPD IIHCHDWSSA 900 PVAWLFKEQY AQNGLSNGRV VFTIHNLEFG AHHIGKAMAR CDKATTVSYT YSREVSGHGA 960 IAPHFSKFHG IRNGIDPDIW DPYSDNFIPV HYTSENVVEG KSAAKKALQQ RLGLQQTDTP 1020 VVGIISRLTV QKGIHLIKHA IYRTLERNGQ VVLLGSAPDH RIQGDFTNLA SKLHGEYHGR 1080 VKLCLTYDEP LSHLIYAGAD FILVPSMFEP CGLTQLTAMR YGSIPIVRKT GGLYDTVFDV 1140 DDDKDRAREQ GLEPNGFSFE GADSNGVDYA LDRAITTWYD ARDWFHSLCK RVMEQDWTWN 1200 RPALDYMELY HSARKN* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02316 | PLN02316 | 9.0e-24 | 60 | 170 | 124 | + synthase/transferase | ||
| TIGR02095 | glgA | 9.0e-147 | 768 | 1213 | 490 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 2.0e-156 | 768 | 1216 | 487 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 2.0e-167 | 769 | 1212 | 493 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PLN02316 | PLN02316 | 0 | 224 | 1215 | 1003 | + synthase/transferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008152 | metabolic process |
| GO:0009058 | biosynthetic process |
| GO:0009536 | plastid |
| GO:0009987 | cellular process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACY56214.1 | 0 | 1 | 1216 | 1 | 1216 | soluble starch synthase III-1 [Oryza sativa Japonica Group] |
| GenBank | ACY56216.1 | 0 | 1 | 1216 | 1 | 1216 | soluble starch synthase III-1 [Oryza sativa Japonica Group] |
| GenBank | ACY56219.1 | 0 | 1 | 1216 | 1 | 1216 | soluble starch synthase III-1 [Oryza sativa Indica Group] |
| EMBL | CAE03511.2 | 0 | 3 | 1216 | 1 | 1214 | OSJNBa0053K19.19 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001053933.1 | 0 | 1 | 1216 | 1 | 1216 | Os04g0624600 [Oryza sativa (japonica cultivar-group)] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 768 | 1211 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 768 | 1211 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 768 | 1211 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 768 | 1211 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 768 | 1211 | 1 | 474 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO794758 | 565 | 652 | 1215 | 0 |
| HO778003 | 697 | 306 | 1001 | 0 |
| HO794758 | 109 | 499 | 605 | 0.13 |
| HO778003 | 111 | 303 | 398 | 0.5 |
| HO794758 | 90 | 314 | 398 | 2.9 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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