| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os04g54810.1 |
| Family | GH3 |
| Protein Properties | Length: 766 Molecular Weight: 80920.7 Isoelectric Point: 6.8722 |
| Chromosome | Chromosome/Scaffold: 4 Start: 32588940 End: 32595893 |
| Description | beta-D-xylosidase 4 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 78 | 326 | 0 |
| ALPRLGIPAYEWWSEALHGVSYVGPGTRFSTLVPGATSFPQPILTAASFNASLFRAIGEVVSTEARAMHNVGLAGLTFWSPNINIFRDPRWGRGQETPGE DPLLASKYAVGYVTGLQDAGGGSDALKVAACCKHYTAYDVDNWKGVERYTFDAVVSQQDLDDTFQPPFKSCVIDGNVASVMCSYNKVNGKPTCADKDLLS GVIRGDWKLNGYIVSDCDSVDVLYNNQHYTKNPEDAAAITIKSGLDLNC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 766 Download |
| MAMAARGVLA MVVAVAVVWC NNVARAQTPV FACDASNATV SGYGFCDRTK SSAARAADLL 60 GRLTLAEKVG FLVNKQAALP RLGIPAYEWW SEALHGVSYV GPGTRFSTLV PGATSFPQPI 120 LTAASFNASL FRAIGEVVST EARAMHNVGL AGLTFWSPNI NIFRDPRWGR GQETPGEDPL 180 LASKYAVGYV TGLQDAGGGS DALKVAACCK HYTAYDVDNW KGVERYTFDA VVSQQDLDDT 240 FQPPFKSCVI DGNVASVMCS YNKVNGKPTC ADKDLLSGVI RGDWKLNGYI VSDCDSVDVL 300 YNNQHYTKNP EDAAAITIKS GLDLNCGNFL AQHTVAAVQA GKLSESDVDR AITNNFIVLM 360 RLGFFDGDPR KLPFGSLGPK DVCTSSNQEL AREAARQGIV LLKNTGALPL SAKSIKSMAV 420 IGPNANASFT MIGNYEGTPC KYTTPLQGLG ANVATVYQPG CTNVGCSGNS LQLSAATQAA 480 ASADVTVLVV GADQSVERES LDRTSLLLPG QQPQLVSAVA NASRGPVILV VMSGGPFDIS 540 FAKSSDKISA ILWVGYPGEA GGAALADILF GYHNPGGRLP VTWYPASFAD KVSMTDMRMR 600 PDSSTGYPGR TYRFYTGDTV YAFGDGLSYT KFAHSLVSAP EQVAVQLAEG HACHTEHCFS 660 VEAAGEHCGS LSFDVHLRVR NAGGMAGGHT VFLFSSPPSV HSAPAKHLLG FEKVSLEPGQ 720 AGVVAFKVDV CKDLSVVDEL GNRKVALGSH TLHVGDLKHT LNLRV* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam01915 | Glyco_hydro_3_C | 1.0e-51 | 399 | 630 | 241 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| COG1472 | BglX | 2.0e-58 | 74 | 462 | 397 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| pfam00933 | Glyco_hydro_3 | 4.0e-66 | 64 | 354 | 321 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| PRK15098 | PRK15098 | 3.0e-73 | 57 | 730 | 760 | + beta-D-glucoside glucohydrolase; Provisional | ||
| PLN03080 | PLN03080 | 0 | 29 | 765 | 759 | + Probable beta-xylosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005576 | extracellular region |
| GO:0005618 | cell wall |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK38481.1 | 0 | 24 | 765 | 32 | 777 | alpha-L-arabinofuranosidase/beta-D-xylosidase isoenzyme ARA-I [Hordeum vulgare] |
| EMBL | CAE03635.1 | 0 | 130 | 765 | 204 | 839 | OSJNBb0003B01.27 [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEE61783.1 | 0 | 1 | 765 | 1 | 771 | hypothetical protein OsJ_16354 [Oryza sativa Japonica Group] |
| RefSeq | NP_001054038.1 | 0 | 1 | 765 | 1 | 765 | Os04g0640700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002448619.1 | 0 | 22 | 765 | 25 | 767 | hypothetical protein SORBIDRAFT_06g030270 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3u48_B | 0 | 114 | 728 | 91 | 696 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 3u48_A | 0 | 114 | 728 | 91 | 696 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 3u4a_B | 0 | 114 | 728 | 91 | 696 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 3u4a_A | 0 | 114 | 728 | 91 | 696 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 2x41_A | 3.00018e-42 | 55 | 763 | 3 | 713 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |
