| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os05g20020.1 |
| Family | GH28 |
| Protein Properties | Length: 486 Molecular Weight: 51775.3 Isoelectric Point: 5.3702 |
| Chromosome | Chromosome/Scaffold: 5 Start: 11699752 End: 11703004 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 115 | 437 | 0 |
| AACAVESAVISVPSDGTFTITTTTFTGPCKPGLVFQVDGVLMPPDGPDCWPPSDNRRQWLVFSNLDGLTLRGAGTIEGNGEGWWNLPCKPHRGPNGSTLR GPCDSPTLVRFFMSRNLVVEGLRVENSPEFHFRFDGCSDVRVDGLSIRSPANSPNTDGIHVENTQRVAIYNSMISNGDDCISIGTGSYDVDIQNVSCGPG HGISIGSLGVHNSQACVANVTVRNAVIRNSDNGLRIKTWQGGMGSVSGINFDTVSMENVRNCIIIDQYYCLDKRCMNQSTAVHVTDVSYANVRGSYDVRA APIHFACSDTVPCTNITMSEVEL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 486 Download |
| MGGGPSRLGL PRLLMVVALV LLPLCGFGVH GRNHIHKKPH GGGGGGGRQH RGGGTVVSSP 60 AVPPADEQTQ PPGIVPSDPV IPAQPEQCVF DVRAFGAVGD GTTDDTEAFR AAWRAACAVE 120 SAVISVPSDG TFTITTTTFT GPCKPGLVFQ VDGVLMPPDG PDCWPPSDNR RQWLVFSNLD 180 GLTLRGAGTI EGNGEGWWNL PCKPHRGPNG STLRGPCDSP TLVRFFMSRN LVVEGLRVEN 240 SPEFHFRFDG CSDVRVDGLS IRSPANSPNT DGIHVENTQR VAIYNSMISN GDDCISIGTG 300 SYDVDIQNVS CGPGHGISIG SLGVHNSQAC VANVTVRNAV IRNSDNGLRI KTWQGGMGSV 360 SGINFDTVSM ENVRNCIIID QYYCLDKRCM NQSTAVHVTD VSYANVRGSY DVRAAPIHFA 420 CSDTVPCTNI TMSEVELLPF SGELVDDPFC WSAYGLQQTP TIPPIYCLQD GLPDSLLDNP 480 DLRCR* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 6.0e-65 | 90 | 437 | 353 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 4.0e-66 | 90 | 443 | 358 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 2.0e-81 | 92 | 437 | 350 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-85 | 124 | 437 | 314 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 4.0e-106 | 89 | 464 | 380 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAS98503.1 | 0 | 1 | 485 | 1 | 504 | unknown protein [Oryza sativa Japonica Group] |
| RefSeq | NP_001055086.1 | 0 | 1 | 485 | 1 | 485 | Os05g0279900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002263668.1 | 0 | 29 | 484 | 24 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312305.1 | 0 | 88 | 475 | 86 | 473 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002519290.1 | 0 | 13 | 478 | 8 | 474 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 2e-22 | 171 | 437 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-22 | 171 | 437 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-22 | 171 | 437 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 2e-22 | 171 | 437 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 2e-22 | 171 | 437 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
