| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os05g44600.1 |
| Family | CE8 |
| Protein Properties | Length: 399 Molecular Weight: 43256.4 Isoelectric Point: 9.9137 |
| Chromosome | Chromosome/Scaffold: 5 Start: 25949108 End: 25952202 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 101 | 392 | 0 |
| VVDKNPAAGNFTSIQAAVDSIPLINLARVVIKVNAGTYTEKVTISPLRAFVTIEGAGADKTVVQWGDTADTVGPLGRPFGTFASATFAVNAQFFVAKNIT FKNTAPVPRPGALGKQGVALRISADNAAFLGCNFLGAQDTLYDHLGRHYYRDCYIEGSVDFIFGNALSLYEGCHVHAIARNYGALTAQNRMSILEDTGFS FVNCRVTGSGALYLGRAWGTFSRVVFAYTYMDNIIIPRGWYNWGDPTREMTVFYGQYKCTGPGSNYAGRVAWSRELTDQEAKPFISLSFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 399 Download |
| MAVSVSWSWA PRFLACVAVA VLLVTSGLGG AAAGGGGRRH GHTKGLRPGK AAAKPYYPVN 60 ATAVEAIERQ FTRWVRSMVG RRHSTFQRAL YRGLLPTRTL VVDKNPAAGN FTSIQAAVDS 120 IPLINLARVV IKVNAGTYTE KVTISPLRAF VTIEGAGADK TVVQWGDTAD TVGPLGRPFG 180 TFASATFAVN AQFFVAKNIT FKNTAPVPRP GALGKQGVAL RISADNAAFL GCNFLGAQDT 240 LYDHLGRHYY RDCYIEGSVD FIFGNALSLY EGCHVHAIAR NYGALTAQNR MSILEDTGFS 300 FVNCRVTGSG ALYLGRAWGT FSRVVFAYTY MDNIIIPRGW YNWGDPTREM TVFYGQYKCT 360 GPGSNYAGRV AWSRELTDQE AKPFISLSFI DGLEWVKL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02432 | PLN02432 | 3.0e-110 | 109 | 397 | 289 | + putative pectinesterase | ||
| PLN02634 | PLN02634 | 3.0e-115 | 91 | 396 | 307 | + probable pectinesterase | ||
| PLN02304 | PLN02304 | 1.0e-118 | 97 | 397 | 309 | + probable pectinesterase | ||
| PLN02665 | PLN02665 | 6.0e-119 | 61 | 395 | 340 | + pectinesterase family protein | ||
| PLN02682 | PLN02682 | 0 | 49 | 398 | 350 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0005737 | cytoplasm |
| GO:0008150 | biological_process |
| GO:0008152 | metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC79546.1 | 0 | 1 | 398 | 1 | 398 | hypothetical protein OsI_20666 [Oryza sativa Indica Group] |
| RefSeq | NP_001044216.1 | 0 | 12 | 398 | 7 | 384 | Os01g0743200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001056077.1 | 0 | 1 | 398 | 1 | 398 | Os05g0521600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002440102.1 | 0 | 38 | 398 | 39 | 406 | hypothetical protein SORBIDRAFT_09g026060 [Sorghum bicolor] |
| RefSeq | XP_002458469.1 | 0 | 12 | 398 | 7 | 402 | hypothetical protein SORBIDRAFT_03g034250 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 108 | 397 | 16 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 1.99965e-42 | 109 | 397 | 13 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 1e-28 | 101 | 384 | 34 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 3e-18 | 97 | 384 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 3e-18 | 97 | 384 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
