| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os05g45860.1 |
| Family | CBM43 |
| Protein Properties | Length: 407 Molecular Weight: 45174.8 Isoelectric Point: 6.5168 |
| Chromosome | Chromosome/Scaffold: 5 Start: 26570425 End: 26573958 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 291 | 372 | 1.3e-23 |
| WCVFNKDAKDKFKDLPAAVNYACSNADCTPLGYGSSCNNLSHDGNISYAFNIYFQTMDQDVRACSFEGLAKITTINASQGGC | |||
| GH17 | 1 | 270 | 0 |
| MLAVPNDQLARLAGDPRRAYRWAEQNVSAYLEAGVDVRYVAVGNEPFLKSYNGSLINVTFPALKNMQRALDKLGLGDHVKAVVPLNADVYNSPENKPVPS AGSFRKDINALMVDIVNFLNMNNAPFVVNIYPFLSLYQNPNFPLNFSFFDGGSKPVYDKGVVYTNVFDANFDTLVWSLRKAGVPDMKIIVGEVGWPTDGD KHANVRYAQKFYDGFLKKMVRNIGTPLRPGWMEVYLFALIDENQKSVLPGRFERHWGLLTYDGKPKFSMD | |||
| Full Sequence |
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| Protein Sequence Length: 407 Download |
| MLAVPNDQLA RLAGDPRRAY RWAEQNVSAY LEAGVDVRYV AVGNEPFLKS YNGSLINVTF 60 PALKNMQRAL DKLGLGDHVK AVVPLNADVY NSPENKPVPS AGSFRKDINA LMVDIVNFLN 120 MNNAPFVVNI YPFLSLYQNP NFPLNFSFFD GGSKPVYDKG VVYTNVFDAN FDTLVWSLRK 180 AGVPDMKIIV GEVGWPTDGD KHANVRYAQK FYDGFLKKMV RNIGTPLRPG WMEVYLFALI 240 DENQKSVLPG RFERHWGLLT YDGKPKFSMD LSGDGLDNLV GVEVEYLPAQ WCVFNKDAKD 300 KFKDLPAAVN YACSNADCTP LGYGSSCNNL SHDGNISYAF NIYFQTMDQD VRACSFEGLA 360 KITTINASQG GCLFPVQILS ASERVVPLRF LPTSFLILLM VVSILT* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.009 | 188 | 262 | 75 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-16 | 290 | 360 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-29 | 290 | 374 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 2.0e-64 | 1 | 270 | 272 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005488 | binding |
| GO:0005886 | plasma membrane |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAS75228.1 | 0 | 38 | 381 | 81 | 424 | unknown protein [Oryza sativa Japonica Group] |
| DDBJ | BAG88662.1 | 0 | 1 | 406 | 1 | 406 | unnamed protein product [Oryza sativa Japonica Group] |
| GenBank | EEC79587.1 | 0 | 1 | 350 | 83 | 432 | hypothetical protein OsI_20766 [Oryza sativa Indica Group] |
| GenBank | EEE64491.1 | 0 | 1 | 406 | 83 | 488 | hypothetical protein OsJ_19341 [Oryza sativa Japonica Group] |
| RefSeq | NP_001056153.1 | 0 | 1 | 406 | 83 | 488 | Os05g0535100 [Oryza sativa (japonica cultivar-group)] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ur8_B | 9e-37 | 1 | 272 | 53 | 315 | A Chain A, Crystal Structure Of A Rice Os3bglu6 Beta-glucosidase |
| PDB | 3ur8_A | 9e-37 | 1 | 272 | 53 | 315 | A Chain A, Crystal Structure Of A Rice Os3bglu6 Beta-glucosidase |
| PDB | 3ur7_B | 9e-37 | 1 | 272 | 53 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 9e-37 | 1 | 272 | 53 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 1ghr_A | 2e-36 | 1 | 259 | 51 | 294 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO797198 | 384 | 1 | 382 | 0 |
| CJ659501 | 247 | 160 | 404 | 0 |
| EX345626 | 313 | 31 | 339 | 0 |
| EX343142 | 313 | 66 | 374 | 0 |
| GR410464 | 305 | 31 | 331 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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