| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os05g46510.1 |
| Family | GH28 |
| Protein Properties | Length: 427 Molecular Weight: 45266 Isoelectric Point: 8.3447 |
| Chromosome | Chromosome/Scaffold: 5 Start: 26940098 End: 26943353 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 59 | 396 | 0 |
| NAACASTEPAVLAVPAGKTYQIWPVRLAGPCKKKLKLMISGTIAAPASPDEWAGRDPTKWLYVFRVDDLSVSGGGTIDGMGAEWWARSCKRKKTKPCSTV SAPKALQFEECRRVSVQGITMQNGPQFHLMFTRCTDVKASFLRVVAPESSPNTDGIHLNDTTHAQIMDNLISTGDDCVSMVGNCSDVRVKDISCGPGHGI SIGSLGKNRTTDRIENVRVDTCLLTNTTNGVRIKSWQGGMGYAHNLRFEGIVMKNVSNPIIIDQYYCDQPTPCANQTQAVEVRKIEFAGIRGTSATEQAI KLACSDAVPCRDLELRNVNLTMVGGGAASAFCHRASGK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 427 Download |
| MAILRVSVMR LVVAAMAVAA GVLFFSGAGE ARVLLTLDDF GAVGDGITND TQAFLDAWNA 60 ACASTEPAVL AVPAGKTYQI WPVRLAGPCK KKLKLMISGT IAAPASPDEW AGRDPTKWLY 120 VFRVDDLSVS GGGTIDGMGA EWWARSCKRK KTKPCSTVSA PKALQFEECR RVSVQGITMQ 180 NGPQFHLMFT RCTDVKASFL RVVAPESSPN TDGIHLNDTT HAQIMDNLIS TGDDCVSMVG 240 NCSDVRVKDI SCGPGHGISI GSLGKNRTTD RIENVRVDTC LLTNTTNGVR IKSWQGGMGY 300 AHNLRFEGIV MKNVSNPIII DQYYCDQPTP CANQTQAVEV RKIEFAGIRG TSATEQAIKL 360 ACSDAVPCRD LELRNVNLTM VGGGAASAFC HRASGKAAGA VVPASCLAKA PHRMLGDATP 420 AARVGS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 2.0e-94 | 35 | 411 | 383 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 9.0e-95 | 21 | 406 | 397 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-96 | 62 | 406 | 345 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 6.0e-107 | 30 | 403 | 376 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-158 | 34 | 408 | 375 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005618 | cell wall |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008152 | metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAU43991.1 | 0 | 1 | 426 | 1 | 426 | unknown protein [Oryza sativa Japonica Group] |
| GenBank | ACF80870.1 | 0 | 30 | 414 | 29 | 415 | unknown [Zea mays] |
| GenBank | EEC79626.1 | 0 | 1 | 426 | 1 | 426 | hypothetical protein OsI_20838 [Oryza sativa Indica Group] |
| GenBank | EEE64553.1 | 0 | 1 | 426 | 1 | 385 | hypothetical protein OsJ_19405 [Oryza sativa Japonica Group] |
| RefSeq | NP_001056198.1 | 0 | 1 | 426 | 1 | 408 | Os05g0542800 [Oryza sativa (japonica cultivar-group)] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-26 | 129 | 379 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 2e-18 | 109 | 392 | 57 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-18 | 109 | 392 | 57 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-18 | 109 | 392 | 57 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-18 | 109 | 392 | 57 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
