| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os05g46520.1 |
| Family | GH28 |
| Protein Properties | Length: 446 Molecular Weight: 46740.5 Isoelectric Point: 6.107 |
| Chromosome | Chromosome/Scaffold: 5 Start: 26943380 End: 26945869 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 59 | 400 | 0 |
| WSAACATGDHTFLHVPAAKSYLVWPVTLAGPCREEIKLFISGNIVAPESPDEWPEGGGGGGEWLHFVGVSDLTLSGGGVIDGRGHRWWARSCKAKHNATE NCTTQAAPKALHFEDCQGISVMGITLQNSQESHLTFTRCSHVKANYLRITSPEDSPDTTGVHVVSSRNVHIMDDSISTGHDCVSIVGNSTDVRLRAISCG PGHGISIGGLGENRSYHRVEKIKMDTLFISNTENGVRVKTFQGGCGTARKMKFGDILMKNVKNPIVIDQQNSSSNEIPCGSKNGSAVTVGEISYTDITGT SASERAVTFACSEAAPCSKLSLENVNITMAGGQNASAYCHHA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 446 Download |
| MPPSSRMAPP PLAGVVVVAA ALLLLLPEAA EPRTLLSLDD FGAVGDGVAN DTQALVDAWS 60 AACATGDHTF LHVPAAKSYL VWPVTLAGPC REEIKLFISG NIVAPESPDE WPEGGGGGGE 120 WLHFVGVSDL TLSGGGVIDG RGHRWWARSC KAKHNATENC TTQAAPKALH FEDCQGISVM 180 GITLQNSQES HLTFTRCSHV KANYLRITSP EDSPDTTGVH VVSSRNVHIM DDSISTGHDC 240 VSIVGNSTDV RLRAISCGPG HGISIGGLGE NRSYHRVEKI KMDTLFISNT ENGVRVKTFQ 300 GGCGTARKMK FGDILMKNVK NPIVIDQQNS SSNEIPCGSK NGSAVTVGEI SYTDITGTSA 360 SERAVTFACS EAAPCSKLSL ENVNITMAGG QNASAYCHHA FGKSVGVVVP DSCLGKEDYL 420 RRQVPASAAA AGGGTQEKGG EDDDR* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-60 | 63 | 397 | 335 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 3.0e-64 | 36 | 414 | 384 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 1.0e-65 | 41 | 404 | 366 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 9.0e-79 | 34 | 410 | 379 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-121 | 35 | 431 | 398 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005618 | cell wall |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008152 | metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY98883.1 | 0 | 28 | 445 | 22 | 439 | hypothetical protein OsI_20839 [Oryza sativa Indica Group] |
| GenBank | EEE64554.1 | 0 | 1 | 445 | 1 | 445 | hypothetical protein OsJ_19406 [Oryza sativa Japonica Group] |
| RefSeq | NP_001056199.1 | 0 | 1 | 445 | 1 | 445 | Os05g0542900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151374.1 | 0 | 31 | 444 | 24 | 428 | polygalacturonase [Zea mays] |
| RefSeq | XP_002440168.1 | 0 | 31 | 444 | 24 | 422 | hypothetical protein SORBIDRAFT_09g027160 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-20 | 104 | 386 | 85 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.000000000000002 | 130 | 393 | 72 | 324 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000000002 | 130 | 393 | 72 | 324 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000000002 | 130 | 393 | 72 | 324 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.000000000000002 | 130 | 393 | 72 | 324 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
