| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os05g50260.1 |
| Family | GH28 |
| Protein Properties | Length: 272 Molecular Weight: 29374.4 Isoelectric Point: 7.3787 |
| Chromosome | Chromosome/Scaffold: 5 Start: 28801864 End: 28804291 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 5 | 222 | 0 |
| KPTALRFYGSSNVTVTGITIVNSSQCHLKFDSCQGVMVHDLTISSPENSPNTDGIHLQNSKQVSIHHSNLACGDDCVSIQTGCSDINIHNVNCGPGHGIS IGGLGRYNTKACVSNVTVRDVNMFKTMTGVRIKTWQGGSGLVQGIRFSNIQVSEVQTPIIIDQFYCDRTTCRNQTSAVAVLGVQYENIRGTFTIKPAHFA CSDSSPCSEITLTGIQLK | |||
| Full Sequence |
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| Protein Sequence Length: 272 Download |
| MPQIKPTALR FYGSSNVTVT GITIVNSSQC HLKFDSCQGV MVHDLTISSP ENSPNTDGIH 60 LQNSKQVSIH HSNLACGDDC VSIQTGCSDI NIHNVNCGPG HGISIGGLGR YNTKACVSNV 120 TVRDVNMFKT MTGVRIKTWQ GGSGLVQGIR FSNIQVSEVQ TPIIIDQFYC DRTTCRNQTS 180 AVAVLGVQYE NIRGTFTIKP AHFACSDSSP CSEITLTGIQ LKPLIVPQYH LYNPFCWQAF 240 GELSTPTIPP ISCLQIGKPS GNNVMSDYDL C* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 1.0e-43 | 5 | 256 | 256 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 7.0e-47 | 6 | 222 | 221 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 8.0e-51 | 6 | 222 | 218 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-60 | 3 | 221 | 220 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 1.0e-61 | 6 | 250 | 247 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAT39158.1 | 0 | 1 | 271 | 264 | 571 | putative polygalacturonase [Oryza sativa Japonica Group] |
| DDBJ | BAG98413.1 | 0 | 1 | 271 | 1 | 271 | unnamed protein product [Oryza sativa Japonica Group] |
| GenBank | EEC79746.1 | 0 | 1 | 271 | 264 | 534 | hypothetical protein OsI_21117 [Oryza sativa Indica Group] |
| GenBank | EEE64806.1 | 0 | 1 | 271 | 264 | 534 | hypothetical protein OsJ_19662 [Oryza sativa Japonica Group] |
| RefSeq | NP_001056414.1 | 0 | 1 | 271 | 42 | 312 | Os05g0578600 [Oryza sativa (japonica cultivar-group)] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-26 | 1 | 169 | 146 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 2e-17 | 3 | 221 | 97 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-17 | 3 | 221 | 97 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-17 | 3 | 221 | 97 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-17 | 3 | 221 | 97 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EB402734 | 256 | 16 | 271 | 0 |
| JG927574 | 251 | 1 | 251 | 0 |
| CJ808527 | 239 | 32 | 269 | 0 |
| JG881257 | 247 | 1 | 247 | 0 |
| DN222415 | 241 | 1 | 241 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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