| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os05g50490.1 |
| Family | CBM43 |
| Protein Properties | Length: 271 Molecular Weight: 27044.9 Isoelectric Point: 5.8744 |
| Chromosome | Chromosome/Scaffold: 5 Start: 28950838 End: 28952754 |
| Description | Carbohydrate-binding X8 domain superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 108 | 190 | 3e-35 |
| WCVASPSASTAALQVALDYACGQGGVDCSAIQSGGGCFNPNTVRDHASFAFNSYYQKNPVQTSCDFAGTAILTSTDPSSSSCK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 271 Download |
| MDLWRVHCLG WLLVLLLFSH AAGGGGAEQV ATQAHHDASR RLSAQVAHGT PERDVTSPLA 60 TVPVDNPAAN PTVTSTTNPA AMPGTQTTPS LANPVAAGGG GGGGGGSWCV ASPSASTAAL 120 QVALDYACGQ GGVDCSAIQS GGGCFNPNTV RDHASFAFNS YYQKNPVQTS CDFAGTAILT 180 STDPSSSSCK YPSTSTGASV LNTSTPTNPA FGGYDNSPPG FGNNSPPLYG SMSPPGYNDN 240 IGAAAAMAGS KETLLSLACV VATVSLNLYK * 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 9.0e-23 | 107 | 178 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-30 | 107 | 179 | 74 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003674 | molecular_function |
| GO:0005623 | cell |
| GO:0008150 | biological_process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC79758.1 | 0 | 1 | 270 | 1 | 271 | hypothetical protein OsI_21142 [Oryza sativa Indica Group] |
| GenBank | EEE64827.1 | 0 | 1 | 270 | 1 | 271 | hypothetical protein OsJ_19684 [Oryza sativa Japonica Group] |
| GenBank | EEE64827.1 | 0.00007 | 26 | 73 | 323 | 371 | hypothetical protein OsJ_19684 [Oryza sativa Japonica Group] |
| RefSeq | NP_001056434.1 | 0 | 1 | 270 | 1 | 281 | Os05g0581900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002441577.1 | 0 | 1 | 265 | 1 | 246 | hypothetical protein SORBIDRAFT_09g029700 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 7e-21 | 106 | 195 | 11 | 100 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
