| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os05g50960.1 |
| Family | GH28 |
| Protein Properties | Length: 449 Molecular Weight: 47425.8 Isoelectric Point: 6.989 |
| Chromosome | Chromosome/Scaffold: 5 Start: 29240182 End: 29242468 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 77 | 422 | 0 |
| RRARGGALLYVPAGVWLTGPFNLTSHMTLFLARGAVIRATQDTSSWPLIDPLPSYGRGRELPGGRYMSLIHGDGLQDVFITGENGTIDGQGSVWWDMWRK RTLPFTRPHLLELISSTDVIISNVVFQDSPFWNIHPVYCSNVVITNVTVLAPHDSPNTDGIDPDSSSNVCIEDSYISTGDDLISIKSGWDEYGIAFGRPS SGITIRRITGSGPFAGFAVGSETSGGVENVHVEHLNFFGMGVGIHVKTNSGRGGFIRNITVSEVTLNGARYGLRIAGDVGGHPDASYDPSKLPVVDGVTI KNVWGQNIRQAGLVRGIRDSVFSRICLSNVKLYGGDSVGPWKCRAV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 449 Download |
| MVASLRLSLA AAAAAALAVA VALLLPPLAA AQGETTCPAD VPPRGAWMSV ASFGGVGDGR 60 ALNTAAFARA VARIERRRAR GGALLYVPAG VWLTGPFNLT SHMTLFLARG AVIRATQDTS 120 SWPLIDPLPS YGRGRELPGG RYMSLIHGDG LQDVFITGEN GTIDGQGSVW WDMWRKRTLP 180 FTRPHLLELI SSTDVIISNV VFQDSPFWNI HPVYCSNVVI TNVTVLAPHD SPNTDGIDPD 240 SSSNVCIEDS YISTGDDLIS IKSGWDEYGI AFGRPSSGIT IRRITGSGPF AGFAVGSETS 300 GGVENVHVEH LNFFGMGVGI HVKTNSGRGG FIRNITVSEV TLNGARYGLR IAGDVGGHPD 360 ASYDPSKLPV VDGVTIKNVW GQNIRQAGLV RGIRDSVFSR ICLSNVKLYG GDSVGPWKCR 420 AVSGGALDVQ PSPCAELTST SEMSFCTN* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 5.0e-25 | 161 | 435 | 305 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 4.0e-25 | 160 | 342 | 187 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 8.0e-27 | 160 | 439 | 292 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-34 | 153 | 426 | 296 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-49 | 85 | 374 | 322 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAT44156.1 | 0 | 1 | 448 | 1 | 474 | putative polygalacturonase [Oryza sativa Japonica Group] |
| GenBank | EAY99223.1 | 0 | 1 | 448 | 1 | 448 | hypothetical protein OsI_21181 [Oryza sativa Indica Group] |
| RefSeq | NP_001056466.1 | 0 | 1 | 448 | 1 | 448 | Os05g0587000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001141464.1 | 0 | 32 | 448 | 25 | 444 | hypothetical protein LOC100273574 [Zea mays] |
| RefSeq | XP_002441600.1 | 0 | 29 | 448 | 18 | 439 | hypothetical protein SORBIDRAFT_09g030140 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 4e-39 | 41 | 410 | 23 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 4e-39 | 41 | 410 | 23 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 4e-39 | 41 | 410 | 23 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 4e-39 | 41 | 410 | 23 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 5e-19 | 91 | 423 | 51 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
