y
Basic Information | |
---|---|
Species | Oryza sativa |
Cazyme ID | LOC_Os06g05260.1 |
Family | PL1 |
Protein Properties | Length: 449 Molecular Weight: 50210.4 Isoelectric Point: 10.298 |
Chromosome | Chromosome/Scaffold: 6 Start: 2372992 End: 2374946 |
Description | Pectate lyase family protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 163 | 368 | 0 |
IQERPLWIVFARSMVIRLAKELIVTSDKTIDGRGAQVHVTGAQITVQAVSNVIIHNLHIHNSVPRSGGLIRDSMHHFGIRGESDGDGISVMGSSNIWIDH VSMSNCSDGLIDITDGSTAITISNSHFTKHDHVMLFGARDDSPKDKIMQVTLAFNHFGKGLVQRMPRCRFGFFHMVNNDYTHWLMYAIGGNMNPTIISQG NRFRAS |
Full Sequence |
---|
Protein Sequence Length: 449 Download |
MAGSVVTRSP LCSILFYVLA TAAAATATAT LVGNITADEE YWAKRSEVAR SFNRAAYVSD 60 PVAVLNRFNE DVLNTTTATA AAARRSLMRR YRRRGPCTVT NPIDLCWRCR KNWASRRKRL 120 AKCAMGFGHK ATGGLAGKIY IVTDAGDEHL VIPRRGTLRH AVIQERPLWI VFARSMVIRL 180 AKELIVTSDK TIDGRGAQVH VTGAQITVQA VSNVIIHNLH IHNSVPRSGG LIRDSMHHFG 240 IRGESDGDGI SVMGSSNIWI DHVSMSNCSD GLIDITDGST AITISNSHFT KHDHVMLFGA 300 RDDSPKDKIM QVTLAFNHFG KGLVQRMPRC RFGFFHMVNN DYTHWLMYAI GGNMNPTIIS 360 QGNRFRASDD MKLKEVTKRE YTSYDEYKEW VWKSQDDLFL NGAFFNESGG RNERRYNRLD 420 LIQARNGRYV GRMTRFAGTL PCRVGKKC* 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam05048 | NosD | 3.0e-5 | 188 | 302 | 119 | + Periplasmic copper-binding protein (NosD). NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain. | ||
pfam04431 | Pec_lyase_N | 1.0e-15 | 34 | 74 | 41 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 1.0e-32 | 182 | 366 | 197 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-68 | 181 | 365 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-76 | 176 | 369 | 205 | + Amb_all domain. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0003824 | catalytic activity |
GO:0008150 | biological_process |
GO:0008152 | metabolic process |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY99621.1 | 0 | 1 | 448 | 1 | 448 | hypothetical protein OsI_21600 [Oryza sativa Indica Group] |
GenBank | EAY99626.1 | 0 | 1 | 448 | 1 | 441 | hypothetical protein OsI_21605 [Oryza sativa Indica Group] |
GenBank | EAY99627.1 | 0 | 1 | 448 | 1 | 403 | hypothetical protein OsI_21606 [Oryza sativa Indica Group] |
RefSeq | NP_001056784.1 | 0 | 1 | 448 | 1 | 448 | Os06g0144900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002436463.1 | 0 | 22 | 448 | 37 | 465 | hypothetical protein SORBIDRAFT_10g003080 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 101 | 440 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 101 | 440 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-25 | 132 | 356 | 22 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 8e-19 | 184 | 426 | 128 | 375 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 3e-17 | 183 | 369 | 75 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |