| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os06g05272.1 |
| Family | PL1 |
| Protein Properties | Length: 349 Molecular Weight: 39063.2 Isoelectric Point: 8.1211 |
| Chromosome | Chromosome/Scaffold: 6 Start: 2378129 End: 2379273 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 72 | 267 | 0 |
| WIVFARDMIIQLRQELIVNHNKTIDGRGAQVHITGAQITLQGVQHVIIHNVHIHHSVPHGGGMIRDSKRHYGLRTRSDGDGISIMSSSNIWIDHVSMSNC SDGLIDAVSGSTAITISNGHFTKHDHVMLFGASNSDAQDEVMQITVAFNHFGKGLVPRCRFGFFHVVNNDYTHWLMYAIGGNMNPTIISQGNRFIA | |||
| Full Sequence |
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| Protein Sequence Length: 349 Download |
| MATNPIDRCW RCRDDWATDR KRLARCVRGF GHRTVGGAAG KIYVVTDASD DEMVIPRKGT 60 LRYGVIQDRP MWIVFARDMI IQLRQELIVN HNKTIDGRGA QVHITGAQIT LQGVQHVIIH 120 NVHIHHSVPH GGGMIRDSKR HYGLRTRSDG DGISIMSSSN IWIDHVSMSN CSDGLIDAVS 180 GSTAITISNG HFTKHDHVML FGASNSDAQD EVMQITVAFN HFGKGLVPRC RFGFFHVVNN 240 DYTHWLMYAI GGNMNPTIIS QGNRFIAPDD LNAKEVTKRE YTPYDEYKEW VWKSQGDVMM 300 NGAFFNESGG QNERSYDQLD FIPAKHGKYV GQLTKFAGTL NCHVGMPC* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-19 | 34 | 265 | 247 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 7.0e-47 | 85 | 265 | 206 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 9.0e-58 | 78 | 269 | 205 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008150 | biological_process |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAA16476.1 | 0 | 1 | 348 | 88 | 438 | pectate lyase homolog [Zea mays] |
| DDBJ | BAD68402.1 | 0 | 1 | 348 | 91 | 438 | putative pectate lyase homolog [Oryza sativa Japonica Group] |
| GenBank | EAY99626.1 | 0 | 1 | 348 | 91 | 441 | hypothetical protein OsI_21605 [Oryza sativa Indica Group] |
| RefSeq | NP_001056781.1 | 0 | 1 | 348 | 103 | 450 | Os06g0144200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001056786.1 | 0 | 1 | 348 | 1 | 348 | Os06g0145100 [Oryza sativa (japonica cultivar-group)] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 4 | 340 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 4 | 340 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 5e-21 | 34 | 256 | 21 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 2e-16 | 82 | 303 | 71 | 312 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1pe9_B | 0.000000000002 | 34 | 309 | 24 | 325 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778688 | 350 | 4 | 349 | 0 |
| CI146281 | 167 | 183 | 349 | 0 |
| CV733041 | 167 | 170 | 336 | 0 |
| FG606120 | 321 | 4 | 319 | 0 |
| EB403216 | 252 | 69 | 317 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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