| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os06g12450.1 |
| Family | GT5 |
| Protein Properties | Length: 811 Molecular Weight: 88375.4 Isoelectric Point: 5.1381 |
| Chromosome | Chromosome/Scaffold: 6 Start: 6748358 End: 6753338 |
| Description | starch synthase 2 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 320 | 803 | 0 |
| NVIVVAAECSPWCKTGGLGDVAGALPKALARRGHRVMVVVPRYGDYAEAQDVGIRKYYKAAGQDLEVKYFHAFIDGVDFVFIDAPLFRHRQDDIYGGNRQ EIMKRMILFCKAAVEVPWHVPCGGVPYGDGNLVFLANDWHTALLPVYLKAYYRDNGMMQYTRSVLVIHNIAYQGRGPVDEFPYMELPEHYLDHFKLYDPV GGEHANIFGAGLKMADRVVTVSPGYLWELKTTEGGWGLHDIIRENDWKMNGIVNGIDYREWNPEVDVHLQSDGYANYTVASLDSSKPRCKAALQRELGLE VRDDVPLIGFIGRLDGQKGVDIIGDAMPWIAGQDVQLVLLGSGRRDLEVMLQRFEAQHNSKVRGWVGFSVKMAHRITAGADVLVMPSRFEPCGLNQLYAM AYGTVPVVHAVGGLRDTMSAFDPFEDTGLGWTFDRAEPHKLIEALGHCLETYRKYKESWRGLQVRGMSQDLSWDHAAELYEEVL | |||
| Full Sequence |
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| Protein Sequence Length: 811 Download |
| MSSAVVASST TFLVALASSA SRGGPRRGRV VGVAAPPALL YDGRAGRLAL RAPPPPRPRP 60 RRRDAGVVRR ADDGENEAAV ERAGEDDDEE EEFSSGAWQP PRSRRGGVGK VLKRRGTVPP 120 VGRYGSGGDA ARVRGAAAPA PAPTQDAASS KNGALLSGRD DDTPASRNGS VVTGADKPAA 180 ATPPVTITKL PAPDSPVILP SVDKPQPEFV IPDATAPAPP PPGSNPRSSA PLPKPDNSEF 240 AEDKSAKVVE SAPKPKATRS SPIPAVEEET WDFKKYFDLN EPDAAEDGDD DDDWADSDAS 300 DSEIDQDDDS GPLAGENVMN VIVVAAECSP WCKTGGLGDV AGALPKALAR RGHRVMVVVP 360 RYGDYAEAQD VGIRKYYKAA GQDLEVKYFH AFIDGVDFVF IDAPLFRHRQ DDIYGGNRQE 420 IMKRMILFCK AAVEVPWHVP CGGVPYGDGN LVFLANDWHT ALLPVYLKAY YRDNGMMQYT 480 RSVLVIHNIA YQGRGPVDEF PYMELPEHYL DHFKLYDPVG GEHANIFGAG LKMADRVVTV 540 SPGYLWELKT TEGGWGLHDI IRENDWKMNG IVNGIDYREW NPEVDVHLQS DGYANYTVAS 600 LDSSKPRCKA ALQRELGLEV RDDVPLIGFI GRLDGQKGVD IIGDAMPWIA GQDVQLVLLG 660 SGRRDLEVML QRFEAQHNSK VRGWVGFSVK MAHRITAGAD VLVMPSRFEP CGLNQLYAMA 720 YGTVPVVHAV GGLRDTMSAF DPFEDTGLGW TFDRAEPHKL IEALGHCLET YRKYKESWRG 780 LQVRGMSQDL SWDHAAELYE EVLVKAKYQW * 840 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 1.0e-83 | 319 | 801 | 501 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 2.0e-131 | 319 | 808 | 501 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 5.0e-163 | 319 | 803 | 494 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 0 | 319 | 806 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 320 | 803 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005975 | carbohydrate metabolic process |
| GO:0006091 | generation of precursor metabolites and energy |
| GO:0008152 | metabolic process |
| GO:0009058 | biosynthetic process |
| GO:0009536 | plastid |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACY56200.1 | 0 | 1 | 810 | 1 | 810 | soluble starch synthase II-3 [Oryza sativa Japonica Group] |
| DDBJ | BAD90592.1 | 0 | 1 | 810 | 1 | 810 | starch synthase IIa [Oryza sativa Japonica Group] |
| GenBank | EAZ00249.1 | 0 | 1 | 810 | 1 | 803 | hypothetical protein OsI_22256 [Oryza sativa Indica Group] |
| RefSeq | NP_001057216.1 | 0 | 1 | 810 | 1 | 810 | Os06g0229800 [Oryza sativa (japonica cultivar-group)] |
| Swiss-Prot | P0C586 | 0 | 1 | 810 | 1 | 810 | SSY23_ORYSI RecName: Full=Soluble starch synthase 2-3, chloroplastic/amyloplastic; AltName: Full=Soluble starch synthase II-3; AltName: Full=Starch synthase IIa; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 319 | 804 | 10 | 509 | H Chain H, Crystal Structure Of Fab15 Mut6 |
| PDB | 3vue_A | 0 | 319 | 804 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 319 | 807 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 319 | 809 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 319 | 809 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO777841 | 319 | 493 | 811 | 0 |
| HO777841 | 189 | 312 | 500 | 0 |
| HO781048 | 392 | 420 | 811 | 0 |
| HO445868 | 438 | 374 | 811 | 0 |
| HO781048 | 41 | 378 | 418 | 0.46 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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