| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os06g16810.1 |
| Family | GH28 |
| Protein Properties | Length: 143 Molecular Weight: 15671.5 Isoelectric Point: 6.4973 |
| Chromosome | Chromosome/Scaffold: 6 Start: 9734900 End: 9735544 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 38 | 115 | 3.5e-21 |
| QAISMMGITLKNSQESHLTFTRCSHVKANYMRITSPEDSPETTGVHVVSSRNVHIMEDSISTCHDCVSIVGNSTDVRL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 143 Download |
| MNCTTLAAPE RFRLAPEDLD QNDGEFVGAA LRGLSGYQAI SMMGITLKNS QESHLTFTRC 60 SHVKANYMRI TSPEDSPETT GVHVVSSRNV HIMEDSISTC HDCVSIVGNS TDVRLRAEEE 120 KCSTYGSHLL KTYNGNGRWR GC* 180 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 1.0e-9 | 40 | 115 | 76 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 8.0e-11 | 45 | 115 | 71 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-11 | 44 | 114 | 71 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-11 | 44 | 110 | 68 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 3.0e-16 | 42 | 116 | 75 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000003 | reproduction |
| GO:0004650 | polygalacturonase activity |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| GO:0007275 | multicellular organismal development |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD69174.1 | 0 | 2 | 136 | 42 | 176 | unknown protein [Oryza sativa Japonica Group] |
| GenBank | EAY98883.1 | 1.00053e-42 | 2 | 117 | 153 | 248 | hypothetical protein OsI_20839 [Oryza sativa Indica Group] |
| GenBank | EEE64554.1 | 1.00053e-42 | 2 | 117 | 159 | 254 | hypothetical protein OsJ_19406 [Oryza sativa Japonica Group] |
| GenBank | EEE65524.1 | 0 | 5 | 100 | 19 | 114 | hypothetical protein OsJ_20973 [Oryza sativa Japonica Group] |
| RefSeq | NP_001056199.1 | 1.00053e-42 | 2 | 117 | 159 | 254 | Os05g0542900 [Oryza sativa (japonica cultivar-group)] |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CV721848 | 116 | 2 | 117 | 2.8026e-45 |
| CB212962 | 80 | 38 | 117 | 2.94273e-44 |
| JK010881 | 116 | 2 | 117 | 3e-34 |
| JK008821 | 116 | 2 | 117 | 3e-34 |
| JK015472 | 78 | 40 | 117 | 7e-34 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Brachypodium distachyon | Bradi2g17920.1 | ||||
| Carica papaya | evm.TU.contig_35388.1 | ||||
| Prunus persica | ppa025007m | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |