y
Basic Information | |
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Species | Oryza sativa |
Cazyme ID | LOC_Os06g28670.1 |
Family | GH28 |
Protein Properties | Length: 475 Molecular Weight: 49501.1 Isoelectric Point: 7.9748 |
Chromosome | Chromosome/Scaffold: 6 Start: 16329395 End: 16331464 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 115 | 439 | 0 |
SAACAVRSSTVVVPAGYRFVVGPVTFTGDSCQPNTVFQLDGTIVANTDSGAWCSGNAVQQWLEFRSCTGLTIQGSGTVDGQGSHWWSGGAPATDIDADRV GTNNRPTALRVYESTNVAVTGITIQNSARFHLTFDTCRAVEVRGVAIRSPGDSPNTDGIHLAGSVGVSIQNATVACGDDCVSIQDGCSRVLVRGVTCGPG HGISIGGLGKGGAMAVVSDVTVQDVSLVGTSAGVRIKTWQGGSGSVRGVLFSGVRVSAVKTPIVIDQYYCDHATCANQTAAVAVSGVAYSGITGTYTQRP VYLACSDAAPCAGLRLEDIKLAPVK |
Full Sequence |
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Protein Sequence Length: 475 Download |
MMRRPRSLNA STAGSFPFLL VLVVTSSFLS GRCLATTDSH HRRPPAGRHG PPRPVSPPSP 60 PATTFSVLQY GAVGDGDKDD TKASAECRHT HIHSRLILHT LIVMCKFMAF VHAWSAACAV 120 RSSTVVVPAG YRFVVGPVTF TGDSCQPNTV FQLDGTIVAN TDSGAWCSGN AVQQWLEFRS 180 CTGLTIQGSG TVDGQGSHWW SGGAPATDID ADRVGTNNRP TALRVYESTN VAVTGITIQN 240 SARFHLTFDT CRAVEVRGVA IRSPGDSPNT DGIHLAGSVG VSIQNATVAC GDDCVSIQDG 300 CSRVLVRGVT CGPGHGISIG GLGKGGAMAV VSDVTVQDVS LVGTSAGVRI KTWQGGSGSV 360 RGVLFSGVRV SAVKTPIVID QYYCDHATCA NQTAAVAVSG VAYSGITGTY TQRPVYLACS 420 DAAPCAGLRL EDIKLAPVKE GGYGRLYGPF CWKAYGDEVR PVVPPVDCLM AGEP* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 4.0e-56 | 62 | 469 | 414 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 1.0e-58 | 63 | 435 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 8.0e-62 | 63 | 435 | 377 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 5.0e-68 | 123 | 435 | 314 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-85 | 65 | 465 | 404 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
GO:0016787 | hydrolase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABV24999.1 | 0 | 63 | 474 | 87 | 471 | polygalacturonase 2 [Oncidium Gower Ramsey] |
GenBank | EAZ00960.1 | 8e-34 | 1 | 84 | 1 | 87 | hypothetical protein OsI_22993 [Oryza sativa Indica Group] |
GenBank | EAZ00960.1 | 0 | 151 | 474 | 109 | 432 | hypothetical protein OsI_22993 [Oryza sativa Indica Group] |
GenBank | EAZ37024.1 | 1e-35 | 1 | 84 | 1 | 84 | hypothetical protein OsJ_21369 [Oryza sativa Japonica Group] |
GenBank | EAZ37024.1 | 0 | 151 | 474 | 106 | 429 | hypothetical protein OsJ_21369 [Oryza sativa Japonica Group] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-24 | 180 | 383 | 107 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 6e-24 | 173 | 440 | 56 | 324 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 6e-24 | 173 | 440 | 56 | 324 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 6e-24 | 173 | 440 | 56 | 324 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 6e-24 | 173 | 440 | 56 | 324 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |