| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os06g31270.1 |
| Family | GH28 |
| Protein Properties | Length: 414 Molecular Weight: 43088.3 Isoelectric Point: 6.5908 |
| Chromosome | Chromosome/Scaffold: 6 Start: 18186738 End: 18188528 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 48 | 378 | 0 |
| AACGSAAGNATLLIPEGTFAVSTVEFSGPCKNGRSPLAVVVDGVLHPCAGGCHRKSGDDDVWITFSGVSNLLVTGAGTLDGRGGEHGHSNGGGKSKTTTT LELDSVANATVRGLRFLNSRGFHLNLHRSSHVAAERLRIEAPAASRNTDGIHVGLSSHVTVADSLVGTGDDCVSIGPGSSGVVIAGVACGPGHGISVGSL GREEGEGDVRGLVVRNCTVVGTTNGLRIKTWPGSPPSRAFNITFRDIVMSNVSNPIIIDQHYCPHAHCSDIAKPSLVQISDVTYERIEGTSSSRVAVQLL CSEDRPCSGVRFDRVNLSCGRERCGSKFSNV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 414 Download |
| MTTILKVFTL HLFIMLHGVH GHIYDVTEYG AEPSNIDNKD AFLAAWRAAC GSAAGNATLL 60 IPEGTFAVST VEFSGPCKNG RSPLAVVVDG VLHPCAGGCH RKSGDDDVWI TFSGVSNLLV 120 TGAGTLDGRG GEHGHSNGGG KSKTTTTLEL DSVANATVRG LRFLNSRGFH LNLHRSSHVA 180 AERLRIEAPA ASRNTDGIHV GLSSHVTVAD SLVGTGDDCV SIGPGSSGVV IAGVACGPGH 240 GISVGSLGRE EGEGDVRGLV VRNCTVVGTT NGLRIKTWPG SPPSRAFNIT FRDIVMSNVS 300 NPIIIDQHYC PHAHCSDIAK PSLVQISDVT YERIEGTSSS RVAVQLLCSE DRPCSGVRFD 360 RVNLSCGRER CGSKFSNVEG TKPTLVAADE AAAFGPGAVP PPDQDADVVE SQH* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 4.0e-65 | 59 | 364 | 319 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 2.0e-66 | 7 | 365 | 364 | + polygalacturonase | ||
| PLN03010 | PLN03010 | 2.0e-69 | 1 | 380 | 383 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-83 | 58 | 367 | 313 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-93 | 22 | 378 | 364 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD62225.1 | 0 | 1 | 413 | 1 | 425 | putative Exopolygalacturonase precursor [Oryza sativa Japonica Group] |
| GenBank | EAZ01129.1 | 0 | 1 | 413 | 1 | 413 | hypothetical protein OsI_23157 [Oryza sativa Indica Group] |
| GenBank | EEE65794.1 | 0 | 1 | 413 | 1 | 425 | hypothetical protein OsJ_21499 [Oryza sativa Japonica Group] |
| Swiss-Prot | Q6H9K0 | 0 | 21 | 385 | 7 | 366 | PGLR2_PLAAC RecName: Full=Exopolygalacturonase; AltName: Full=Pollen allergen Pla a 2; AltName: Allergen=Pla a 2; Flags: Precursor |
| RefSeq | XP_002444632.1 | 0 | 23 | 381 | 35 | 385 | hypothetical protein SORBIDRAFT_07g025130 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-20 | 90 | 332 | 90 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 2e-18 | 110 | 378 | 63 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-18 | 110 | 378 | 63 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-18 | 110 | 378 | 63 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 2e-18 | 110 | 378 | 63 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
